Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24024 | 5' | -59.1 | NC_005262.1 | + | 4432 | 0.66 | 0.550812 |
Target: 5'- uACGaUC-GCGACGGCCgauggacgGCCCGcGAGg -3' miRNA: 3'- -UGCcAGuUGCUGCCGGa-------CGGGCuCUU- -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 42467 | 0.66 | 0.549766 |
Target: 5'- gACGGUCuguc-CGGCCUGCCaguucaccucguuCGAGAu -3' miRNA: 3'- -UGCCAGuugcuGCCGGACGG-------------GCUCUu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 17085 | 0.66 | 0.530034 |
Target: 5'- cGCGcccGUCGACG-CGGCggGCCgCGAGGAg -3' miRNA: 3'- -UGC---CAGUUGCuGCCGgaCGG-GCUCUU- -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 50161 | 0.67 | 0.486416 |
Target: 5'- uCGGUCGGCGcaGCGGCCUucgucuccggcuucGUCuCGGGAGc -3' miRNA: 3'- uGCCAGUUGC--UGCCGGA--------------CGG-GCUCUU- -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 48217 | 0.67 | 0.499433 |
Target: 5'- cGCGGUCggUGGCaugcaGGUCaUGCCCGAc-- -3' miRNA: 3'- -UGCCAGuuGCUG-----CCGG-ACGGGCUcuu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 46785 | 0.67 | 0.499433 |
Target: 5'- cGCGGuaUCAACGGCGGCgaG-CCGAuGAc -3' miRNA: 3'- -UGCC--AGUUGCUGCCGgaCgGGCU-CUu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 50585 | 0.68 | 0.412961 |
Target: 5'- aGCGGUucCAGCauuGGCGGCCU-CCUGAGGc -3' miRNA: 3'- -UGCCA--GUUG---CUGCCGGAcGGGCUCUu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 59085 | 0.68 | 0.43139 |
Target: 5'- gACGGUCGaagcGCGACGGCgCgggagGCgUGAGGc -3' miRNA: 3'- -UGCCAGU----UGCUGCCG-Ga----CGgGCUCUu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 51092 | 0.68 | 0.412961 |
Target: 5'- cGCGGUCGcCGGucgcuuccuUGGCCUGCUCGAc-- -3' miRNA: 3'- -UGCCAGUuGCU---------GCCGGACGGGCUcuu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 17386 | 0.69 | 0.3776 |
Target: 5'- cCGGUCGAcuCGGCGGCCgacaaUGC-CGAGAc -3' miRNA: 3'- uGCCAGUU--GCUGCCGG-----ACGgGCUCUu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 4572 | 0.69 | 0.3776 |
Target: 5'- uCGcGcCAGCGGCGGCgCUGCUCGGGc- -3' miRNA: 3'- uGC-CaGUUGCUGCCG-GACGGGCUCuu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 15152 | 0.69 | 0.3776 |
Target: 5'- gGCGGguaCAGCGACcauGCCUGCUCGAa-- -3' miRNA: 3'- -UGCCa--GUUGCUGc--CGGACGGGCUcuu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 56343 | 0.7 | 0.313229 |
Target: 5'- cUGGUCGAgGGCGGCgUGCCCcgcGAGc- -3' miRNA: 3'- uGCCAGUUgCUGCCGgACGGG---CUCuu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 54520 | 0.71 | 0.270645 |
Target: 5'- cCGGUCGgcgcgcGCGGCGGCCUGCgccuCCGcGAGc -3' miRNA: 3'- uGCCAGU------UGCUGCCGGACG----GGCuCUU- -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 3754 | 0.73 | 0.193453 |
Target: 5'- cACGGcCAGCGACGGCCgcgaguacaaCCGGGAGa -3' miRNA: 3'- -UGCCaGUUGCUGCCGGacg-------GGCUCUU- -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 25673 | 0.73 | 0.194464 |
Target: 5'- cUGGUCAucgaguCGACGGCCgaggGCCgCGAGGg -3' miRNA: 3'- uGCCAGUu-----GCUGCCGGa---CGG-GCUCUu -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 49512 | 0.74 | 0.161734 |
Target: 5'- cGCGaUCGcCGAgGGCCUGCUCGAGGAg -3' miRNA: 3'- -UGCcAGUuGCUgCCGGACGGGCUCUU- -5' |
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24024 | 5' | -59.1 | NC_005262.1 | + | 29088 | 1.05 | 0.000913 |
Target: 5'- gACGGUCAACGACGGCCUGCCCGAGAAc -3' miRNA: 3'- -UGCCAGUUGCUGCCGGACGGGCUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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