miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 3' -59.5 NC_005262.1 + 8366 0.66 0.490207
Target:  5'- cUCGCgagcgACGCGGGCAGcuucCUCGGCcGCu -3'
miRNA:   3'- uAGCG-----UGCGCUCGUCc---GAGUCGuCGu -5'
24025 3' -59.5 NC_005262.1 + 49378 0.66 0.484143
Target:  5'- -aCGCGCGCGuucaucaccGCGGGCgUCgcaacuggucuguucGGCGGCAu -3'
miRNA:   3'- uaGCGUGCGCu--------CGUCCG-AG---------------UCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 2770 0.66 0.48012
Target:  5'- cUCGaGCGUGAGCuuGCUaCGGCGGCc -3'
miRNA:   3'- uAGCgUGCGCUCGucCGA-GUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 44702 0.66 0.48012
Target:  5'- cUUGCGCGCGGGCuucucGcGCUCgAGCGGa- -3'
miRNA:   3'- uAGCGUGCGCUCGu----C-CGAG-UCGUCgu -5'
24025 3' -59.5 NC_005262.1 + 27532 0.66 0.470135
Target:  5'- -cCGCGCGCaccgacgaGGGCGaGCUCAGCcccGGCGa -3'
miRNA:   3'- uaGCGUGCG--------CUCGUcCGAGUCG---UCGU- -5'
24025 3' -59.5 NC_005262.1 + 58624 0.66 0.470135
Target:  5'- -cUGCAC-CGu-CAGGCUCGGCAGUc -3'
miRNA:   3'- uaGCGUGcGCucGUCCGAGUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 2478 0.66 0.470135
Target:  5'- -aUGCGCGUGGuGCcgcgcuuGGCgacCAGCAGCAa -3'
miRNA:   3'- uaGCGUGCGCU-CGu------CCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 39712 0.66 0.470135
Target:  5'- -aCGCGCGCGA--GGGCgUCGGUAGaCGa -3'
miRNA:   3'- uaGCGUGCGCUcgUCCG-AGUCGUC-GU- -5'
24025 3' -59.5 NC_005262.1 + 10886 0.66 0.470135
Target:  5'- gAUCGU-CGCG-GCA-GCUCGcGCAGCAg -3'
miRNA:   3'- -UAGCGuGCGCuCGUcCGAGU-CGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 59475 0.66 0.470135
Target:  5'- uGUCGCgcgccugcuGCGCGAGCgccuGGaGCUCGGCguugccGGCGu -3'
miRNA:   3'- -UAGCG---------UGCGCUCG----UC-CGAGUCG------UCGU- -5'
24025 3' -59.5 NC_005262.1 + 52812 0.66 0.460258
Target:  5'- uUCGCA-GUG-GCAGGCgcUCGGCgAGCGg -3'
miRNA:   3'- uAGCGUgCGCuCGUCCG--AGUCG-UCGU- -5'
24025 3' -59.5 NC_005262.1 + 60635 0.66 0.460258
Target:  5'- -aCGCugGCGAGC-GGCg-AGCAccGCGg -3'
miRNA:   3'- uaGCGugCGCUCGuCCGagUCGU--CGU- -5'
24025 3' -59.5 NC_005262.1 + 45207 0.66 0.450491
Target:  5'- cUCGCAgGCG-GCauguccgccGGGCUCGGCcugaacgccGGCAa -3'
miRNA:   3'- uAGCGUgCGCuCG---------UCCGAGUCG---------UCGU- -5'
24025 3' -59.5 NC_005262.1 + 59340 0.66 0.450491
Target:  5'- uUCGCuccuGCGCGuGCuGaGCgugCAGCAGCu -3'
miRNA:   3'- uAGCG----UGCGCuCGuC-CGa--GUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 50414 0.66 0.450491
Target:  5'- uUCGUccuGCGCG-GCGGGCgCuGCGGCc -3'
miRNA:   3'- uAGCG---UGCGCuCGUCCGaGuCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 29762 0.66 0.450491
Target:  5'- uUCGCGgGuUGGGCGGGCUgCgcgggcgcgGGCGGCAu -3'
miRNA:   3'- uAGCGUgC-GCUCGUCCGA-G---------UCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 17498 0.66 0.450491
Target:  5'- -cCGCGCGCGAcGCGucgaUCGGCAGCc -3'
miRNA:   3'- uaGCGUGCGCU-CGUccg-AGUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 5083 0.66 0.450491
Target:  5'- -gCGCGUGCGA-CcGGCUCGGCGGUg -3'
miRNA:   3'- uaGCGUGCGCUcGuCCGAGUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 12320 0.66 0.440839
Target:  5'- --gGCAUGCGGcucgugccGCAGcGCgcggCGGCAGCAu -3'
miRNA:   3'- uagCGUGCGCU--------CGUC-CGa---GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 35561 0.67 0.435105
Target:  5'- cUCGCcggcgcgggaaagaGCGCGAauguugugcucggcGCGGGCUCGGCA-CAg -3'
miRNA:   3'- uAGCG--------------UGCGCU--------------CGUCCGAGUCGUcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.