Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24025 | 3' | -59.5 | NC_005262.1 | + | 2770 | 0.66 | 0.48012 |
Target: 5'- cUCGaGCGUGAGCuuGCUaCGGCGGCc -3' miRNA: 3'- uAGCgUGCGCUCGucCGA-GUCGUCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 52812 | 0.66 | 0.460258 |
Target: 5'- uUCGCA-GUG-GCAGGCgcUCGGCgAGCGg -3' miRNA: 3'- uAGCGUgCGCuCGUCCG--AGUCG-UCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 60635 | 0.66 | 0.460258 |
Target: 5'- -aCGCugGCGAGC-GGCg-AGCAccGCGg -3' miRNA: 3'- uaGCGugCGCUCGuCCGagUCGU--CGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 44702 | 0.66 | 0.48012 |
Target: 5'- cUUGCGCGCGGGCuucucGcGCUCgAGCGGa- -3' miRNA: 3'- uAGCGUGCGCUCGu----C-CGAG-UCGUCgu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 58624 | 0.66 | 0.470135 |
Target: 5'- -cUGCAC-CGu-CAGGCUCGGCAGUc -3' miRNA: 3'- uaGCGUGcGCucGUCCGAGUCGUCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 2478 | 0.66 | 0.470135 |
Target: 5'- -aUGCGCGUGGuGCcgcgcuuGGCgacCAGCAGCAa -3' miRNA: 3'- uaGCGUGCGCU-CGu------CCGa--GUCGUCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 27532 | 0.66 | 0.470135 |
Target: 5'- -cCGCGCGCaccgacgaGGGCGaGCUCAGCcccGGCGa -3' miRNA: 3'- uaGCGUGCG--------CUCGUcCGAGUCG---UCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 49378 | 0.66 | 0.484143 |
Target: 5'- -aCGCGCGCGuucaucaccGCGGGCgUCgcaacuggucuguucGGCGGCAu -3' miRNA: 3'- uaGCGUGCGCu--------CGUCCG-AG---------------UCGUCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 8366 | 0.66 | 0.490207 |
Target: 5'- cUCGCgagcgACGCGGGCAGcuucCUCGGCcGCu -3' miRNA: 3'- uAGCG-----UGCGCUCGUCc---GAGUCGuCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 17498 | 0.66 | 0.450491 |
Target: 5'- -cCGCGCGCGAcGCGucgaUCGGCAGCc -3' miRNA: 3'- uaGCGUGCGCU-CGUccg-AGUCGUCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 45207 | 0.66 | 0.450491 |
Target: 5'- cUCGCAgGCG-GCauguccgccGGGCUCGGCcugaacgccGGCAa -3' miRNA: 3'- uAGCGUgCGCuCG---------UCCGAGUCG---------UCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 5083 | 0.66 | 0.450491 |
Target: 5'- -gCGCGUGCGA-CcGGCUCGGCGGUg -3' miRNA: 3'- uaGCGUGCGCUcGuCCGAGUCGUCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 29762 | 0.66 | 0.450491 |
Target: 5'- uUCGCGgGuUGGGCGGGCUgCgcgggcgcgGGCGGCAu -3' miRNA: 3'- uAGCGUgC-GCUCGUCCGA-G---------UCGUCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 59475 | 0.66 | 0.470135 |
Target: 5'- uGUCGCgcgccugcuGCGCGAGCgccuGGaGCUCGGCguugccGGCGu -3' miRNA: 3'- -UAGCG---------UGCGCUCG----UC-CGAGUCG------UCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 10886 | 0.66 | 0.470135 |
Target: 5'- gAUCGU-CGCG-GCA-GCUCGcGCAGCAg -3' miRNA: 3'- -UAGCGuGCGCuCGUcCGAGU-CGUCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 59340 | 0.66 | 0.450491 |
Target: 5'- uUCGCuccuGCGCGuGCuGaGCgugCAGCAGCu -3' miRNA: 3'- uAGCG----UGCGCuCGuC-CGa--GUCGUCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 39712 | 0.66 | 0.470135 |
Target: 5'- -aCGCGCGCGA--GGGCgUCGGUAGaCGa -3' miRNA: 3'- uaGCGUGCGCUcgUCCG-AGUCGUC-GU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 50414 | 0.66 | 0.450491 |
Target: 5'- uUCGUccuGCGCG-GCGGGCgCuGCGGCc -3' miRNA: 3'- uAGCG---UGCGCuCGUCCGaGuCGUCGu -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 12320 | 0.66 | 0.440839 |
Target: 5'- --gGCAUGCGGcucgugccGCAGcGCgcggCGGCAGCAu -3' miRNA: 3'- uagCGUGCGCU--------CGUC-CGa---GUCGUCGU- -5' |
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24025 | 3' | -59.5 | NC_005262.1 | + | 61144 | 0.67 | 0.403448 |
Target: 5'- -gCGCugGCGcAGCAGaucgCGGCGGCGg -3' miRNA: 3'- uaGCGugCGC-UCGUCcga-GUCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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