miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 3' -59.5 NC_005262.1 + 29358 1.06 0.000533
Target:  5'- aAUCGCACGCGAGCAGGCUCAGCAGCAa -3'
miRNA:   3'- -UAGCGUGCGCUCGUCCGAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 7508 0.79 0.065007
Target:  5'- gAUCGCgACGCauccaucGGGCAGGUUCGGCGGCGc -3'
miRNA:   3'- -UAGCG-UGCG-------CUCGUCCGAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 17547 0.76 0.105365
Target:  5'- gGUCGCGCGCGAgGCGGcaGCcgCGGCGGCGc -3'
miRNA:   3'- -UAGCGUGCGCU-CGUC--CGa-GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 43745 0.74 0.130422
Target:  5'- gAUCGUGCGCGuGCugaccacgaaguucGGGCUCAGCgAGCGc -3'
miRNA:   3'- -UAGCGUGCGCuCG--------------UCCGAGUCG-UCGU- -5'
24025 3' -59.5 NC_005262.1 + 11477 0.74 0.131141
Target:  5'- cUCGCGCGCGAGCacauGGGCcgcgucgccgagcUCGGCuGCAu -3'
miRNA:   3'- uAGCGUGCGCUCG----UCCG-------------AGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 44156 0.74 0.135162
Target:  5'- -gCGCGCGCGAucggGCAGGagcgCGGCGGCGa -3'
miRNA:   3'- uaGCGUGCGCU----CGUCCga--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 6321 0.72 0.202346
Target:  5'- -gUGCGCGCG-GCGGGCuUCAGCAucucgGCGg -3'
miRNA:   3'- uaGCGUGCGCuCGUCCG-AGUCGU-----CGU- -5'
24025 3' -59.5 NC_005262.1 + 23018 0.72 0.202346
Target:  5'- cUCGCGCG-GAGCAuGGCgUCGGCgAGCGc -3'
miRNA:   3'- uAGCGUGCgCUCGU-CCG-AGUCG-UCGU- -5'
24025 3' -59.5 NC_005262.1 + 13497 0.72 0.202346
Target:  5'- cUCGCugGCGA--AGGCgaaggCGGCGGCAu -3'
miRNA:   3'- uAGCGugCGCUcgUCCGa----GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 5050 0.72 0.207186
Target:  5'- --gGCGCcugaucgGCGGGCAGGCccgCGGCGGCGg -3'
miRNA:   3'- uagCGUG-------CGCUCGUCCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 15595 0.71 0.224625
Target:  5'- -gCGCGCGCGAGgAGcGCgu-GCGGCAg -3'
miRNA:   3'- uaGCGUGCGCUCgUC-CGaguCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 48173 0.71 0.235919
Target:  5'- cAUCGCGCGUcggcgccGGGC-GGCUCGucGCGGCAg -3'
miRNA:   3'- -UAGCGUGCG-------CUCGuCCGAGU--CGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 61408 0.71 0.236527
Target:  5'- cUCGCGCGCGAGgcgaAGGC--GGCGGCc -3'
miRNA:   3'- uAGCGUGCGCUCg---UCCGagUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 51162 0.71 0.236527
Target:  5'- aGUCGCcgaGCGCGcAGCAGGCagccgacgacgCGGCGGCc -3'
miRNA:   3'- -UAGCG---UGCGC-UCGUCCGa----------GUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 22497 0.71 0.242674
Target:  5'- cUgGCGCGCGAGCGGaucGCgaAGCGGCAg -3'
miRNA:   3'- uAgCGUGCGCUCGUC---CGagUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 50177 0.7 0.261913
Target:  5'- uUCGCGCG-GcGCGGGUUCGGuCGGCGc -3'
miRNA:   3'- uAGCGUGCgCuCGUCCGAGUC-GUCGU- -5'
24025 3' -59.5 NC_005262.1 + 16370 0.7 0.261913
Target:  5'- -aCGC-CGCGAGCGGcGCgCAGCAagGCAu -3'
miRNA:   3'- uaGCGuGCGCUCGUC-CGaGUCGU--CGU- -5'
24025 3' -59.5 NC_005262.1 + 5184 0.7 0.275417
Target:  5'- cGUCGCggGCGCGGGCGcGGC-CGGC-GCGa -3'
miRNA:   3'- -UAGCG--UGCGCUCGU-CCGaGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 11551 0.7 0.275417
Target:  5'- cUCGCGCGCGAGCGcGGUaggCAcgaugcgcgggcGCGGCGu -3'
miRNA:   3'- uAGCGUGCGCUCGU-CCGa--GU------------CGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 61482 0.7 0.275417
Target:  5'- cUCGCGCGCGAggucguaguaGC-GGCUgcgCAGCGGCu -3'
miRNA:   3'- uAGCGUGCGCU----------CGuCCGA---GUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.