miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 3' -59.5 NC_005262.1 + 23643 0.67 0.431306
Target:  5'- -cCGCGCGCG-GCGGGCgguuggUCAGUcuGCGc -3'
miRNA:   3'- uaGCGUGCGCuCGUCCG------AGUCGu-CGU- -5'
24025 3' -59.5 NC_005262.1 + 34577 0.67 0.425644
Target:  5'- aGUCGCgcgccgccGCGCGGaugugcucgaacgccGUAGGCUCcgGGCAGCc -3'
miRNA:   3'- -UAGCG--------UGCGCU---------------CGUCCGAG--UCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 48472 0.67 0.421894
Target:  5'- gAUCGCgagccGCGUGGGCAcgggcGGCgcgaCGGCAGCc -3'
miRNA:   3'- -UAGCG-----UGCGCUCGU-----CCGa---GUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 50677 0.67 0.421894
Target:  5'- cUCGCGCuaccggguugaGCGgcAGCGGGCUCgGGCuGCGg -3'
miRNA:   3'- uAGCGUG-----------CGC--UCGUCCGAG-UCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 10076 0.67 0.421894
Target:  5'- cAUCGCuuGCcAGCAGGCUCGauCGGCu -3'
miRNA:   3'- -UAGCGugCGcUCGUCCGAGUc-GUCGu -5'
24025 3' -59.5 NC_005262.1 + 10496 0.67 0.421894
Target:  5'- --aGCAgCGCcAGCAuGGCggcCAGCAGCAg -3'
miRNA:   3'- uagCGU-GCGcUCGU-CCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 42933 0.67 0.412608
Target:  5'- -cCGCGCGCGugaugcacGGCAGGUUgAGCucgAGCu -3'
miRNA:   3'- uaGCGUGCGC--------UCGUCCGAgUCG---UCGu -5'
24025 3' -59.5 NC_005262.1 + 43845 0.67 0.403448
Target:  5'- -cCGCGCGCGgcggugcgccGGCAGGacCUCGGC-GCGa -3'
miRNA:   3'- uaGCGUGCGC----------UCGUCC--GAGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 17606 0.67 0.403448
Target:  5'- --aGCGCGCgGAGCuGGagcgcCAGCAGCGc -3'
miRNA:   3'- uagCGUGCG-CUCGuCCga---GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 61144 0.67 0.403448
Target:  5'- -gCGCugGCGcAGCAGaucgCGGCGGCGg -3'
miRNA:   3'- uaGCGugCGC-UCGUCcga-GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 11427 0.67 0.403448
Target:  5'- -cCGCGCGCGAGC-GGCgUCuuGCGGa- -3'
miRNA:   3'- uaGCGUGCGCUCGuCCG-AGu-CGUCgu -5'
24025 3' -59.5 NC_005262.1 + 40220 0.67 0.403448
Target:  5'- gGUUGCAgCGCGAGCgucguacuuucGGGaucaagcgCAGCAGCGa -3'
miRNA:   3'- -UAGCGU-GCGCUCG-----------UCCga------GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 7549 0.67 0.403448
Target:  5'- -cCGCugGCGuGGCAagacGGCUgGGUAGCc -3'
miRNA:   3'- uaGCGugCGC-UCGU----CCGAgUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 4550 0.67 0.394418
Target:  5'- cAUCGUGCGCGcGCGGcGCaucucgcgcCAGCGGCGg -3'
miRNA:   3'- -UAGCGUGCGCuCGUC-CGa--------GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 23162 0.67 0.38552
Target:  5'- cGUCGauccUGCGGGCGGGUUCGGUAucGCGu -3'
miRNA:   3'- -UAGCgu--GCGCUCGUCCGAGUCGU--CGU- -5'
24025 3' -59.5 NC_005262.1 + 50677 0.67 0.38552
Target:  5'- -aCGCcuACGCGGGCAaguGGUUCGGCucGCGc -3'
miRNA:   3'- uaGCG--UGCGCUCGU---CCGAGUCGu-CGU- -5'
24025 3' -59.5 NC_005262.1 + 12546 0.67 0.38552
Target:  5'- uGUUGCG-GCG-GCAGGUcgCGGCGGCGc -3'
miRNA:   3'- -UAGCGUgCGCuCGUCCGa-GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 34285 0.67 0.38552
Target:  5'- -cCGCGauCGCGGGCGGcaGCUCGgaauGCAGCGu -3'
miRNA:   3'- uaGCGU--GCGCUCGUC--CGAGU----CGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 28833 0.68 0.375887
Target:  5'- cGUCGCGCuCGAuccagaugauccaGCAGG-UCGGCGGCGu -3'
miRNA:   3'- -UAGCGUGcGCU-------------CGUCCgAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 46777 0.68 0.374153
Target:  5'- -gCGCGCGCGgcgcugacugcaucGGCGGGCgUCGGUgccGGCGc -3'
miRNA:   3'- uaGCGUGCGC--------------UCGUCCG-AGUCG---UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.