miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 3' -59.5 NC_005262.1 + 2478 0.66 0.470135
Target:  5'- -aUGCGCGUGGuGCcgcgcuuGGCgacCAGCAGCAa -3'
miRNA:   3'- uaGCGUGCGCU-CGu------CCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 2770 0.66 0.48012
Target:  5'- cUCGaGCGUGAGCuuGCUaCGGCGGCc -3'
miRNA:   3'- uAGCgUGCGCUCGucCGA-GUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 4550 0.67 0.394418
Target:  5'- cAUCGUGCGCGcGCGGcGCaucucgcgcCAGCGGCGg -3'
miRNA:   3'- -UAGCGUGCGCuCGUC-CGa--------GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 5050 0.72 0.207186
Target:  5'- --gGCGCcugaucgGCGGGCAGGCccgCGGCGGCGg -3'
miRNA:   3'- uagCGUG-------CGCUCGUCCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 5083 0.66 0.450491
Target:  5'- -gCGCGUGCGA-CcGGCUCGGCGGUg -3'
miRNA:   3'- uaGCGUGCGCUcGuCCGAGUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 5184 0.7 0.275417
Target:  5'- cGUCGCggGCGCGGGCGcGGC-CGGC-GCGa -3'
miRNA:   3'- -UAGCG--UGCGCUCGU-CCGaGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 5234 0.69 0.311599
Target:  5'- gAUCaGCGCGcCGAGCAGGaUCAGCGccGCc -3'
miRNA:   3'- -UAG-CGUGC-GCUCGUCCgAGUCGU--CGu -5'
24025 3' -59.5 NC_005262.1 + 6321 0.72 0.202346
Target:  5'- -gUGCGCGCG-GCGGGCuUCAGCAucucgGCGg -3'
miRNA:   3'- uaGCGUGCGCuCGUCCG-AGUCGU-----CGU- -5'
24025 3' -59.5 NC_005262.1 + 7508 0.79 0.065007
Target:  5'- gAUCGCgACGCauccaucGGGCAGGUUCGGCGGCGc -3'
miRNA:   3'- -UAGCG-UGCG-------CUCGUCCGAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 7549 0.67 0.403448
Target:  5'- -cCGCugGCGuGGCAagacGGCUgGGUAGCc -3'
miRNA:   3'- uaGCGugCGC-UCGU----CCGAgUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 8366 0.66 0.490207
Target:  5'- cUCGCgagcgACGCGGGCAGcuucCUCGGCcGCu -3'
miRNA:   3'- uAGCG-----UGCGCUCGUCc---GAGUCGuCGu -5'
24025 3' -59.5 NC_005262.1 + 10076 0.67 0.421894
Target:  5'- cAUCGCuuGCcAGCAGGCUCGauCGGCu -3'
miRNA:   3'- -UAGCGugCGcUCGUCCGAGUc-GUCGu -5'
24025 3' -59.5 NC_005262.1 + 10496 0.67 0.421894
Target:  5'- --aGCAgCGCcAGCAuGGCggcCAGCAGCAg -3'
miRNA:   3'- uagCGU-GCGcUCGU-CCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 10886 0.66 0.470135
Target:  5'- gAUCGU-CGCG-GCA-GCUCGcGCAGCAg -3'
miRNA:   3'- -UAGCGuGCGCuCGUcCGAGU-CGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 11427 0.67 0.403448
Target:  5'- -cCGCGCGCGAGC-GGCgUCuuGCGGa- -3'
miRNA:   3'- uaGCGUGCGCUCGuCCG-AGu-CGUCgu -5'
24025 3' -59.5 NC_005262.1 + 11477 0.74 0.131141
Target:  5'- cUCGCGCGCGAGCacauGGGCcgcgucgccgagcUCGGCuGCAu -3'
miRNA:   3'- uAGCGUGCGCUCG----UCCG-------------AGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 11551 0.7 0.275417
Target:  5'- cUCGCGCGCGAGCGcGGUaggCAcgaugcgcgggcGCGGCGu -3'
miRNA:   3'- uAGCGUGCGCUCGU-CCGa--GU------------CGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 11762 0.68 0.35128
Target:  5'- aGUUGCGCGCGaAGCucugccGGC-CAGCGuGCAg -3'
miRNA:   3'- -UAGCGUGCGC-UCGu-----CCGaGUCGU-CGU- -5'
24025 3' -59.5 NC_005262.1 + 12320 0.66 0.440839
Target:  5'- --gGCAUGCGGcucgugccGCAGcGCgcggCGGCAGCAu -3'
miRNA:   3'- uagCGUGCGCU--------CGUC-CGa---GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 12546 0.67 0.38552
Target:  5'- uGUUGCG-GCG-GCAGGUcgCGGCGGCGc -3'
miRNA:   3'- -UAGCGUgCGCuCGUCCGa-GUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.