miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 3' -59.5 NC_005262.1 + 50677 0.67 0.38552
Target:  5'- -aCGCcuACGCGGGCAaguGGUUCGGCucGCGc -3'
miRNA:   3'- uaGCG--UGCGCUCGU---CCGAGUCGu-CGU- -5'
24025 3' -59.5 NC_005262.1 + 5184 0.7 0.275417
Target:  5'- cGUCGCggGCGCGGGCGcGGC-CGGC-GCGa -3'
miRNA:   3'- -UAGCG--UGCGCUCGU-CCGaGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 58902 0.7 0.282375
Target:  5'- -gCGCuGCGCGAuCAGGC-CGGCGGCc -3'
miRNA:   3'- uaGCG-UGCGCUcGUCCGaGUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 27298 0.68 0.334988
Target:  5'- --aGCGCgGCGAGCAaGaUCGGCAGCAu -3'
miRNA:   3'- uagCGUG-CGCUCGUcCgAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 44712 0.68 0.334988
Target:  5'- -cCGCGCGCGAggaaauGCA-GCUCGGCcGCGa -3'
miRNA:   3'- uaGCGUGCGCU------CGUcCGAGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 49210 0.68 0.359635
Target:  5'- -aUGCugGCcgaGGGCGGcCUCGGCGGCGc -3'
miRNA:   3'- uaGCGugCG---CUCGUCcGAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 33879 0.68 0.359635
Target:  5'- -cCGCGCGCGAGaCGaucgugcgucGGC-CGGCGGCc -3'
miRNA:   3'- uaGCGUGCGCUC-GU----------CCGaGUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 63072 0.68 0.368127
Target:  5'- cAUCGCGgGCGAGUAuGCggCGGCGuGCAa -3'
miRNA:   3'- -UAGCGUgCGCUCGUcCGa-GUCGU-CGU- -5'
24025 3' -59.5 NC_005262.1 + 28833 0.68 0.375887
Target:  5'- cGUCGCGCuCGAuccagaugauccaGCAGG-UCGGCGGCGu -3'
miRNA:   3'- -UAGCGUGcGCU-------------CGUCCgAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 22497 0.71 0.242674
Target:  5'- cUgGCGCGCGAGCGGaucGCgaAGCGGCAg -3'
miRNA:   3'- uAgCGUGCGCUCGUC---CGagUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 61408 0.71 0.236527
Target:  5'- cUCGCGCGCGAGgcgaAGGC--GGCGGCc -3'
miRNA:   3'- uAGCGUGCGCUCg---UCCGagUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 51162 0.71 0.236527
Target:  5'- aGUCGCcgaGCGCGcAGCAGGCagccgacgacgCGGCGGCc -3'
miRNA:   3'- -UAGCG---UGCGC-UCGUCCGa----------GUCGUCGu -5'
24025 3' -59.5 NC_005262.1 + 7508 0.79 0.065007
Target:  5'- gAUCGCgACGCauccaucGGGCAGGUUCGGCGGCGc -3'
miRNA:   3'- -UAGCG-UGCG-------CUCGUCCGAGUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 17547 0.76 0.105365
Target:  5'- gGUCGCGCGCGAgGCGGcaGCcgCGGCGGCGc -3'
miRNA:   3'- -UAGCGUGCGCU-CGUC--CGa-GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 43745 0.74 0.130422
Target:  5'- gAUCGUGCGCGuGCugaccacgaaguucGGGCUCAGCgAGCGc -3'
miRNA:   3'- -UAGCGUGCGCuCG--------------UCCGAGUCG-UCGU- -5'
24025 3' -59.5 NC_005262.1 + 11477 0.74 0.131141
Target:  5'- cUCGCGCGCGAGCacauGGGCcgcgucgccgagcUCGGCuGCAu -3'
miRNA:   3'- uAGCGUGCGCUCG----UCCG-------------AGUCGuCGU- -5'
24025 3' -59.5 NC_005262.1 + 44156 0.74 0.135162
Target:  5'- -gCGCGCGCGAucggGCAGGagcgCGGCGGCGa -3'
miRNA:   3'- uaGCGUGCGCU----CGUCCga--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 13497 0.72 0.202346
Target:  5'- cUCGCugGCGA--AGGCgaaggCGGCGGCAu -3'
miRNA:   3'- uAGCGugCGCUcgUCCGa----GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 5050 0.72 0.207186
Target:  5'- --gGCGCcugaucgGCGGGCAGGCccgCGGCGGCGg -3'
miRNA:   3'- uagCGUG-------CGCUCGUCCGa--GUCGUCGU- -5'
24025 3' -59.5 NC_005262.1 + 15595 0.71 0.224625
Target:  5'- -gCGCGCGCGAGgAGcGCgu-GCGGCAg -3'
miRNA:   3'- uaGCGUGCGCUCgUC-CGaguCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.