miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 5' -54.4 NC_005262.1 + 32792 0.66 0.830638
Target:  5'- ---cCGGCGGCGCGC-CGgCcAUCGCGu -3'
miRNA:   3'- ucauGUUGCUGCGCGaGC-GcUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 63029 0.66 0.830638
Target:  5'- --aGCGACG-CGCGCaaaUCGCGcUCGUc -3'
miRNA:   3'- ucaUGUUGCuGCGCG---AGCGCuAGCGc -5'
24025 5' -54.4 NC_005262.1 + 46100 0.66 0.830638
Target:  5'- --gGCAgcGCGACGC-CUUGCGcgUGCa -3'
miRNA:   3'- ucaUGU--UGCUGCGcGAGCGCuaGCGc -5'
24025 5' -54.4 NC_005262.1 + 29496 0.66 0.830638
Target:  5'- -cUGCuccuCGA-GCG-UCGCGAUCGCGa -3'
miRNA:   3'- ucAUGuu--GCUgCGCgAGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 20489 0.66 0.830638
Target:  5'- gAGUGCGuaauCG-CGCGCaccaucggCGCGGcgcUCGCGa -3'
miRNA:   3'- -UCAUGUu---GCuGCGCGa-------GCGCU---AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 22837 0.66 0.830638
Target:  5'- --cGCGGCGAagGCGCUCGuCGGcuaucUCGCc -3'
miRNA:   3'- ucaUGUUGCUg-CGCGAGC-GCU-----AGCGc -5'
24025 5' -54.4 NC_005262.1 + 39625 0.66 0.830638
Target:  5'- cGUcUAcCGACGCcCUCGCGcgCGUGa -3'
miRNA:   3'- uCAuGUuGCUGCGcGAGCGCuaGCGC- -5'
24025 5' -54.4 NC_005262.1 + 42853 0.66 0.825272
Target:  5'- cGUGCAucaacGCGcGCGgGCUCgucgaccucggcuauGCGAUCGCc -3'
miRNA:   3'- uCAUGU-----UGC-UGCgCGAG---------------CGCUAGCGc -5'
24025 5' -54.4 NC_005262.1 + 21260 0.66 0.821655
Target:  5'- -aUGCGGCGAuCGuCGCUCGCuuugucacguUCGCGu -3'
miRNA:   3'- ucAUGUUGCU-GC-GCGAGCGcu--------AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 53170 0.66 0.821655
Target:  5'- -uUGCucuGCGGauacaGCaGCuUCGCGAUCGCGc -3'
miRNA:   3'- ucAUGu--UGCUg----CG-CG-AGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 40347 0.66 0.821655
Target:  5'- --cACGGcCGGCGCGCUgaUGuCGAUCGuCGg -3'
miRNA:   3'- ucaUGUU-GCUGCGCGA--GC-GCUAGC-GC- -5'
24025 5' -54.4 NC_005262.1 + 29757 0.66 0.821655
Target:  5'- gGGUugGGCGGgcUGCGCgggCGCGGgcggcaugccgcUCGCu -3'
miRNA:   3'- -UCAugUUGCU--GCGCGa--GCGCU------------AGCGc -5'
24025 5' -54.4 NC_005262.1 + 46136 0.66 0.821655
Target:  5'- cAGUcCGGCGACGCGCgcaugacuUCGUaguagCGCGg -3'
miRNA:   3'- -UCAuGUUGCUGCGCG--------AGCGcua--GCGC- -5'
24025 5' -54.4 NC_005262.1 + 59853 0.66 0.821655
Target:  5'- --aACGGCGAuCGCG-UCGCGGaguUCGUGa -3'
miRNA:   3'- ucaUGUUGCU-GCGCgAGCGCU---AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 4642 0.66 0.812479
Target:  5'- uGGcGCGA-GAUGCGC-CGCGcgCGCa -3'
miRNA:   3'- -UCaUGUUgCUGCGCGaGCGCuaGCGc -5'
24025 5' -54.4 NC_005262.1 + 51659 0.66 0.812479
Target:  5'- ----gGGCGGCGCGCUCaagcucCGcgCGCGa -3'
miRNA:   3'- ucaugUUGCUGCGCGAGc-----GCuaGCGC- -5'
24025 5' -54.4 NC_005262.1 + 24395 0.66 0.812479
Target:  5'- ---cCGGCGGCGCGCacgucCGCGAagGUGa -3'
miRNA:   3'- ucauGUUGCUGCGCGa----GCGCUagCGC- -5'
24025 5' -54.4 NC_005262.1 + 29278 0.66 0.812479
Target:  5'- --aACcGCGACGaGCUCGUGAagCGCa -3'
miRNA:   3'- ucaUGuUGCUGCgCGAGCGCUa-GCGc -5'
24025 5' -54.4 NC_005262.1 + 13562 0.66 0.811551
Target:  5'- gAGUAgCGcGCGACGCGCgcgggcuUCGCGcccUUGCGa -3'
miRNA:   3'- -UCAU-GU-UGCUGCGCG-------AGCGCu--AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 42669 0.66 0.811551
Target:  5'- cGUcCGGCGGCGCGUUCcauucgaGCGAgggaaGCGg -3'
miRNA:   3'- uCAuGUUGCUGCGCGAG-------CGCUag---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.