Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24025 | 5' | -54.4 | NC_005262.1 | + | 29496 | 0.66 | 0.830638 |
Target: 5'- -cUGCuccuCGA-GCG-UCGCGAUCGCGa -3' miRNA: 3'- ucAUGuu--GCUgCGCgAGCGCUAGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 29278 | 0.66 | 0.812479 |
Target: 5'- --aACcGCGACGaGCUCGUGAagCGCa -3' miRNA: 3'- ucaUGuUGCUGCgCGAGCGCUa-GCGc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 24395 | 0.66 | 0.812479 |
Target: 5'- ---cCGGCGGCGCGCacgucCGCGAagGUGa -3' miRNA: 3'- ucauGUUGCUGCGCGa----GCGCUagCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 21260 | 0.66 | 0.821655 |
Target: 5'- -aUGCGGCGAuCGuCGCUCGCuuugucacguUCGCGu -3' miRNA: 3'- ucAUGUUGCU-GC-GCGAGCGcu--------AGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 40347 | 0.66 | 0.821655 |
Target: 5'- --cACGGcCGGCGCGCUgaUGuCGAUCGuCGg -3' miRNA: 3'- ucaUGUU-GCUGCGCGA--GC-GCUAGC-GC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 25097 | 0.66 | 0.803118 |
Target: 5'- --cACGACGACGCGC-CGCucacggaggauGAgcuggCGCGc -3' miRNA: 3'- ucaUGUUGCUGCGCGaGCG-----------CUa----GCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 42853 | 0.66 | 0.825272 |
Target: 5'- cGUGCAucaacGCGcGCGgGCUCgucgaccucggcuauGCGAUCGCc -3' miRNA: 3'- uCAUGU-----UGC-UGCgCGAG---------------CGCUAGCGc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 42221 | 0.66 | 0.803118 |
Target: 5'- cGGcACGACGuACcCGCUCGCGGUUcCGa -3' miRNA: 3'- -UCaUGUUGC-UGcGCGAGCGCUAGcGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 53170 | 0.66 | 0.821655 |
Target: 5'- -uUGCucuGCGGauacaGCaGCuUCGCGAUCGCGc -3' miRNA: 3'- ucAUGu--UGCUg----CG-CG-AGCGCUAGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 32792 | 0.66 | 0.830638 |
Target: 5'- ---cCGGCGGCGCGC-CGgCcAUCGCGu -3' miRNA: 3'- ucauGUUGCUGCGCGaGC-GcUAGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 63029 | 0.66 | 0.830638 |
Target: 5'- --aGCGACG-CGCGCaaaUCGCGcUCGUc -3' miRNA: 3'- ucaUGUUGCuGCGCG---AGCGCuAGCGc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 41122 | 0.66 | 0.793583 |
Target: 5'- cGUGCGcgucACGGCGCGCUCG-GA-CGaCa -3' miRNA: 3'- uCAUGU----UGCUGCGCGAGCgCUaGC-Gc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 22837 | 0.66 | 0.830638 |
Target: 5'- --cGCGGCGAagGCGCUCGuCGGcuaucUCGCc -3' miRNA: 3'- ucaUGUUGCUg-CGCGAGC-GCU-----AGCGc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 15807 | 0.66 | 0.803118 |
Target: 5'- --gGCAcCGGCaaaagccaucucGCGCUCGCGAUCcaGCa -3' miRNA: 3'- ucaUGUuGCUG------------CGCGAGCGCUAG--CGc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 59853 | 0.66 | 0.821655 |
Target: 5'- --aACGGCGAuCGCG-UCGCGGaguUCGUGa -3' miRNA: 3'- ucaUGUUGCU-GCGCgAGCGCU---AGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 20489 | 0.66 | 0.830638 |
Target: 5'- gAGUGCGuaauCG-CGCGCaccaucggCGCGGcgcUCGCGa -3' miRNA: 3'- -UCAUGUu---GCuGCGCGa-------GCGCU---AGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 39625 | 0.66 | 0.830638 |
Target: 5'- cGUcUAcCGACGCcCUCGCGcgCGUGa -3' miRNA: 3'- uCAuGUuGCUGCGcGAGCGCuaGCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 49682 | 0.66 | 0.803118 |
Target: 5'- uGGU-CGGCGGCGCGCgcaaccugaacCGCGAcggCGUGc -3' miRNA: 3'- -UCAuGUUGCUGCGCGa----------GCGCUa--GCGC- -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 29757 | 0.66 | 0.821655 |
Target: 5'- gGGUugGGCGGgcUGCGCgggCGCGGgcggcaugccgcUCGCu -3' miRNA: 3'- -UCAugUUGCU--GCGCGa--GCGCU------------AGCGc -5' |
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24025 | 5' | -54.4 | NC_005262.1 | + | 46100 | 0.66 | 0.830638 |
Target: 5'- --gGCAgcGCGACGC-CUUGCGcgUGCa -3' miRNA: 3'- ucaUGU--UGCUGCGcGAGCGCuaGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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