miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 5' -54.4 NC_005262.1 + 59953 0.66 0.803118
Target:  5'- -uUGCAGCGGCuucacgaacuccGCGa-CGCGAUCGCc -3'
miRNA:   3'- ucAUGUUGCUG------------CGCgaGCGCUAGCGc -5'
24025 5' -54.4 NC_005262.1 + 32392 0.66 0.803118
Target:  5'- --aACAGCGcACGCGCugccUCGaCGuUCGCGc -3'
miRNA:   3'- ucaUGUUGC-UGCGCG----AGC-GCuAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 25097 0.66 0.803118
Target:  5'- --cACGACGACGCGC-CGCucacggaggauGAgcuggCGCGc -3'
miRNA:   3'- ucaUGUUGCUGCGCGaGCG-----------CUa----GCGC- -5'
24025 5' -54.4 NC_005262.1 + 15807 0.66 0.803118
Target:  5'- --gGCAcCGGCaaaagccaucucGCGCUCGCGAUCcaGCa -3'
miRNA:   3'- ucaUGUuGCUG------------CGCGAGCGCUAG--CGc -5'
24025 5' -54.4 NC_005262.1 + 42221 0.66 0.803118
Target:  5'- cGGcACGACGuACcCGCUCGCGGUUcCGa -3'
miRNA:   3'- -UCaUGUUGC-UGcGCGAGCGCUAGcGC- -5'
24025 5' -54.4 NC_005262.1 + 49682 0.66 0.803118
Target:  5'- uGGU-CGGCGGCGCGCgcaaccugaacCGCGAcggCGUGc -3'
miRNA:   3'- -UCAuGUUGCUGCGCGa----------GCGCUa--GCGC- -5'
24025 5' -54.4 NC_005262.1 + 41122 0.66 0.793583
Target:  5'- cGUGCGcgucACGGCGCGCUCG-GA-CGaCa -3'
miRNA:   3'- uCAUGU----UGCUGCGCGAGCgCUaGC-Gc -5'
24025 5' -54.4 NC_005262.1 + 22480 0.66 0.793583
Target:  5'- cAGUGCGA--ACGCGggaugaUCGCGAUcCGCGc -3'
miRNA:   3'- -UCAUGUUgcUGCGCg-----AGCGCUA-GCGC- -5'
24025 5' -54.4 NC_005262.1 + 37896 0.66 0.793583
Target:  5'- cAGUAC-ACGGCGgGCacguUCGCGA-CGuCGg -3'
miRNA:   3'- -UCAUGuUGCUGCgCG----AGCGCUaGC-GC- -5'
24025 5' -54.4 NC_005262.1 + 32639 0.67 0.783884
Target:  5'- cGUAUGGCGAuUGCGCggGCGAUCaggucuGCGa -3'
miRNA:   3'- uCAUGUUGCU-GCGCGagCGCUAG------CGC- -5'
24025 5' -54.4 NC_005262.1 + 4553 0.67 0.783884
Target:  5'- cGUGCGcgcGCGGCGCauCUCGCGccaGCGg -3'
miRNA:   3'- uCAUGU---UGCUGCGc-GAGCGCuagCGC- -5'
24025 5' -54.4 NC_005262.1 + 45756 0.67 0.783884
Target:  5'- aAGUGCGGCaccAUGCGCUCGaucuguucgaCGAgcUCGCGc -3'
miRNA:   3'- -UCAUGUUGc--UGCGCGAGC----------GCU--AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 26974 0.67 0.783884
Target:  5'- --gACAACgGACGCGC-CGgccacuCGAUCGUGa -3'
miRNA:   3'- ucaUGUUG-CUGCGCGaGC------GCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 60539 0.67 0.774031
Target:  5'- uGUAgAGCGacaggcgcaGCGCGUUCuCGGUCGCu -3'
miRNA:   3'- uCAUgUUGC---------UGCGCGAGcGCUAGCGc -5'
24025 5' -54.4 NC_005262.1 + 45871 0.67 0.774031
Target:  5'- --gGCgGACGGCaucaCGCUCGUGAUcCGCGg -3'
miRNA:   3'- ucaUG-UUGCUGc---GCGAGCGCUA-GCGC- -5'
24025 5' -54.4 NC_005262.1 + 48437 0.67 0.774031
Target:  5'- --gACGGCGgcaugaccacGCGCGCguaugccgCGCGgAUCGCGa -3'
miRNA:   3'- ucaUGUUGC----------UGCGCGa-------GCGC-UAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 11342 0.67 0.774031
Target:  5'- --cGCAA-GACGcCGCUCGCG--CGCGg -3'
miRNA:   3'- ucaUGUUgCUGC-GCGAGCGCuaGCGC- -5'
24025 5' -54.4 NC_005262.1 + 59463 0.67 0.764035
Target:  5'- gAGgAUcACGACaCGCUCGCGAagGCa -3'
miRNA:   3'- -UCaUGuUGCUGcGCGAGCGCUagCGc -5'
24025 5' -54.4 NC_005262.1 + 35419 0.67 0.764035
Target:  5'- cAGccCGGCGACGUGUUCGUGuUCGaCGu -3'
miRNA:   3'- -UCauGUUGCUGCGCGAGCGCuAGC-GC- -5'
24025 5' -54.4 NC_005262.1 + 46147 0.67 0.753908
Target:  5'- gAGUAcCAGCGGCGC-CUcaaCGCGAUcuccgaCGCGa -3'
miRNA:   3'- -UCAU-GUUGCUGCGcGA---GCGCUA------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.