miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 5' -54.4 NC_005262.1 + 1297 0.69 0.622803
Target:  5'- cGUGCGACGAaucgaucgaagaauCGCGCg-GCGAacUCGCa -3'
miRNA:   3'- uCAUGUUGCU--------------GCGCGagCGCU--AGCGc -5'
24025 5' -54.4 NC_005262.1 + 1740 0.71 0.550649
Target:  5'- cAGUGCgAGgGGCGCgggauucgaGCUCGCGAUCGa- -3'
miRNA:   3'- -UCAUG-UUgCUGCG---------CGAGCGCUAGCgc -5'
24025 5' -54.4 NC_005262.1 + 4553 0.67 0.783884
Target:  5'- cGUGCGcgcGCGGCGCauCUCGCGccaGCGg -3'
miRNA:   3'- uCAUGU---UGCUGCGc-GAGCGCuagCGC- -5'
24025 5' -54.4 NC_005262.1 + 4642 0.66 0.812479
Target:  5'- uGGcGCGA-GAUGCGC-CGCGcgCGCa -3'
miRNA:   3'- -UCaUGUUgCUGCGCGaGCGCuaGCGc -5'
24025 5' -54.4 NC_005262.1 + 5076 0.69 0.647786
Target:  5'- --gGCGGCGGCGCgugcgaccgGCUCGgCGGUgCGCGc -3'
miRNA:   3'- ucaUGUUGCUGCG---------CGAGC-GCUA-GCGC- -5'
24025 5' -54.4 NC_005262.1 + 5171 0.7 0.593537
Target:  5'- cGGUgACGGcCGGCGuCGCgggCGCGggCGCGg -3'
miRNA:   3'- -UCA-UGUU-GCUGC-GCGa--GCGCuaGCGC- -5'
24025 5' -54.4 NC_005262.1 + 5599 0.71 0.508757
Target:  5'- gAGUACAccgcgGCGGCGUcgauGUUCGCGAccUCGCc -3'
miRNA:   3'- -UCAUGU-----UGCUGCG----CGAGCGCU--AGCGc -5'
24025 5' -54.4 NC_005262.1 + 6640 0.71 0.508757
Target:  5'- uGUGCGGCGGCGCuucgaUCGCG-UCGCc -3'
miRNA:   3'- uCAUGUUGCUGCGcg---AGCGCuAGCGc -5'
24025 5' -54.4 NC_005262.1 + 6870 0.74 0.366452
Target:  5'- uAGUccuCGGCGAUGCcgGC-CGCGAUCGCGu -3'
miRNA:   3'- -UCAu--GUUGCUGCG--CGaGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 6985 0.7 0.561295
Target:  5'- aAGUGgGGC-ACGCgGCUcgaaaaCGCGAUCGCGg -3'
miRNA:   3'- -UCAUgUUGcUGCG-CGA------GCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 6992 0.69 0.626062
Target:  5'- aAGUACGGCGACGC-UUCGaacagCGCGg -3'
miRNA:   3'- -UCAUGUUGCUGCGcGAGCgcua-GCGC- -5'
24025 5' -54.4 NC_005262.1 + 7140 0.72 0.488316
Target:  5'- --aACAGCGAgCGUgaaugGCUCGCGAUgCGCGc -3'
miRNA:   3'- ucaUGUUGCU-GCG-----CGAGCGCUA-GCGC- -5'
24025 5' -54.4 NC_005262.1 + 7530 0.7 0.615203
Target:  5'- aGGUuCGGCGGCGCGUcggCGCGcUCGaCGa -3'
miRNA:   3'- -UCAuGUUGCUGCGCGa--GCGCuAGC-GC- -5'
24025 5' -54.4 NC_005262.1 + 8877 0.69 0.647786
Target:  5'- cGUACAuCGAgCGgGaCUCGCGAUCGa- -3'
miRNA:   3'- uCAUGUuGCU-GCgC-GAGCGCUAGCgc -5'
24025 5' -54.4 NC_005262.1 + 10201 0.77 0.267213
Target:  5'- --aGCGGCGACGCGgUUGCGAacauccgucUCGCGa -3'
miRNA:   3'- ucaUGUUGCUGCGCgAGCGCU---------AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 10648 0.71 0.508757
Target:  5'- cGGUACGcuGCGGCuGCGCgCGgcCGGUCGCGu -3'
miRNA:   3'- -UCAUGU--UGCUG-CGCGaGC--GCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 10916 0.71 0.519113
Target:  5'- gAGcGCGGCgGACGCGCaugCGCuGGUCGUGa -3'
miRNA:   3'- -UCaUGUUG-CUGCGCGa--GCG-CUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 11121 0.7 0.601109
Target:  5'- uGGUGCAACGacccggacuucuggGCGUgGCUC-CGGUCGCa -3'
miRNA:   3'- -UCAUGUUGC--------------UGCG-CGAGcGCUAGCGc -5'
24025 5' -54.4 NC_005262.1 + 11182 0.71 0.519113
Target:  5'- ---cCGACGACGcCGC-CGUGAUCGUGc -3'
miRNA:   3'- ucauGUUGCUGC-GCGaGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 11342 0.67 0.774031
Target:  5'- --cGCAA-GACGcCGCUCGCG--CGCGg -3'
miRNA:   3'- ucaUGUUgCUGC-GCGAGCGCuaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.