miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24025 5' -54.4 NC_005262.1 + 49496 0.71 0.519113
Target:  5'- ---cCGGCGguGCGCGCagCGCGAUCGCc -3'
miRNA:   3'- ucauGUUGC--UGCGCGa-GCGCUAGCGc -5'
24025 5' -54.4 NC_005262.1 + 61133 0.73 0.410835
Target:  5'- cGGUgu-ACGACGCGCUgGCgcagcaGAUCGCGg -3'
miRNA:   3'- -UCAuguUGCUGCGCGAgCG------CUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 43445 0.73 0.420104
Target:  5'- --gACGGCGACGCGCUUGUgcgGAUCGa- -3'
miRNA:   3'- ucaUGUUGCUGCGCGAGCG---CUAGCgc -5'
24025 5' -54.4 NC_005262.1 + 17526 0.73 0.420104
Target:  5'- --gACGACGAUGCacggGCaCGCGGUCGCGc -3'
miRNA:   3'- ucaUGUUGCUGCG----CGaGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 36274 0.73 0.429498
Target:  5'- cAGaUGCGugGGCGCGCg-GCGA-CGCGa -3'
miRNA:   3'- -UC-AUGUugCUGCGCGagCGCUaGCGC- -5'
24025 5' -54.4 NC_005262.1 + 14344 0.72 0.49849
Target:  5'- aAGUu--GCGACGUGCUUGCGcgCGuCGa -3'
miRNA:   3'- -UCAuguUGCUGCGCGAGCGCuaGC-GC- -5'
24025 5' -54.4 NC_005262.1 + 19300 0.72 0.49849
Target:  5'- --cGCAGcCGACGUGCUCGgCGAU-GCGa -3'
miRNA:   3'- ucaUGUU-GCUGCGCGAGC-GCUAgCGC- -5'
24025 5' -54.4 NC_005262.1 + 5599 0.71 0.508757
Target:  5'- gAGUACAccgcgGCGGCGUcgauGUUCGCGAccUCGCc -3'
miRNA:   3'- -UCAUGU-----UGCUGCG----CGAGCGCU--AGCGc -5'
24025 5' -54.4 NC_005262.1 + 6640 0.71 0.508757
Target:  5'- uGUGCGGCGGCGCuucgaUCGCG-UCGCc -3'
miRNA:   3'- uCAUGUUGCUGCGcg---AGCGCuAGCGc -5'
24025 5' -54.4 NC_005262.1 + 24478 0.73 0.410835
Target:  5'- --gGCAcgaGCGuCGCGCUugcCGCGAUCGCa -3'
miRNA:   3'- ucaUGU---UGCuGCGCGA---GCGCUAGCGc -5'
24025 5' -54.4 NC_005262.1 + 54552 0.74 0.383804
Target:  5'- cGgcCAGCGACGuCGC-CGCGuUCGCGa -3'
miRNA:   3'- uCauGUUGCUGC-GCGaGCGCuAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 6870 0.74 0.366452
Target:  5'- uAGUccuCGGCGAUGCcgGC-CGCGAUCGCGu -3'
miRNA:   3'- -UCAu--GUUGCUGCG--CGaGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 53040 0.86 0.066619
Target:  5'- cAGUACAcgggcguggaguACGACGCGCUgaccggCGCGAUCGCGa -3'
miRNA:   3'- -UCAUGU------------UGCUGCGCGA------GCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 41158 0.79 0.199105
Target:  5'- cGUGCAGCG-CGCGCaggagggcaccgcCGCGAUCGCGu -3'
miRNA:   3'- uCAUGUUGCuGCGCGa------------GCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 59942 0.78 0.206035
Target:  5'- --aACGACGAgGCGCUCGCGAagcagauUCGCc -3'
miRNA:   3'- ucaUGUUGCUgCGCGAGCGCU-------AGCGc -5'
24025 5' -54.4 NC_005262.1 + 10201 0.77 0.267213
Target:  5'- --aGCGGCGACGCGgUUGCGAacauccgucUCGCGa -3'
miRNA:   3'- ucaUGUUGCUGCGCgAGCGCU---------AGCGC- -5'
24025 5' -54.4 NC_005262.1 + 15908 0.76 0.288019
Target:  5'- --cGCGACGugGCGC-CGCGAUgCGCc -3'
miRNA:   3'- ucaUGUUGCugCGCGaGCGCUA-GCGc -5'
24025 5' -54.4 NC_005262.1 + 43789 0.75 0.317711
Target:  5'- uAGUGCAGCaGAUGCaggaGCUUucggGCGAUCGCGg -3'
miRNA:   3'- -UCAUGUUG-CUGCG----CGAG----CGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 24810 0.75 0.333399
Target:  5'- aAGgGCAA--GCGCgaGCUCGCGAUCGCGg -3'
miRNA:   3'- -UCaUGUUgcUGCG--CGAGCGCUAGCGC- -5'
24025 5' -54.4 NC_005262.1 + 16747 0.75 0.341453
Target:  5'- gGGUcuGCGAUGugGgCGCagccaugcgauuUCGCGAUCGCGa -3'
miRNA:   3'- -UCA--UGUUGCugC-GCG------------AGCGCUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.