miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24026 3' -59.7 NC_005262.1 + 17639 0.66 0.569723
Target:  5'- gCCGCCgcggCuGCCGCCuCGcgcgcgaccGCGUGcccGUGCa -3'
miRNA:   3'- gGGCGGa---GuUGGCGG-GC---------CGCAU---CACG- -5'
24026 3' -59.7 NC_005262.1 + 61643 0.66 0.563539
Target:  5'- aCCGCCUCGucccggaucgccgagAUCGCCUuGCuGUAGcGCu -3'
miRNA:   3'- gGGCGGAGU---------------UGGCGGGcCG-CAUCaCG- -5'
24026 3' -59.7 NC_005262.1 + 5070 0.66 0.560453
Target:  5'- gCCCGCggcggcggcgcgugCGACCgGCUCGGCG--GUGCg -3'
miRNA:   3'- -GGGCGga------------GUUGG-CGGGCCGCauCACG- -5'
24026 3' -59.7 NC_005262.1 + 2827 0.66 0.559426
Target:  5'- -gCGCCUCGACCucguuugcGCgCUGGCGUGcccGCa -3'
miRNA:   3'- ggGCGGAGUUGG--------CG-GGCCGCAUca-CG- -5'
24026 3' -59.7 NC_005262.1 + 37048 0.66 0.559426
Target:  5'- aCCCGauaCgagCAGCgGCgCGaGCGUGGUGa -3'
miRNA:   3'- -GGGCg--Ga--GUUGgCGgGC-CGCAUCACg -5'
24026 3' -59.7 NC_005262.1 + 34793 0.66 0.559426
Target:  5'- aCCaCUUCGGCUGCCCGGUccaaAGcUGCg -3'
miRNA:   3'- gGGcGGAGUUGGCGGGCCGca--UC-ACG- -5'
24026 3' -59.7 NC_005262.1 + 24321 0.66 0.559426
Target:  5'- uCCCGaucuuaCUCAACCaaUCGGCGUGccgGCg -3'
miRNA:   3'- -GGGCg-----GAGUUGGcgGGCCGCAUca-CG- -5'
24026 3' -59.7 NC_005262.1 + 51462 0.66 0.549181
Target:  5'- gCgGCCUUGGCCGgCgucgcggaCGGCGcGGUGCc -3'
miRNA:   3'- gGgCGGAGUUGGCgG--------GCCGCaUCACG- -5'
24026 3' -59.7 NC_005262.1 + 54774 0.66 0.549181
Target:  5'- aCCGCgUCGAgaauCUGgCCGGCGUucaucuucggGGUGUu -3'
miRNA:   3'- gGGCGgAGUU----GGCgGGCCGCA----------UCACG- -5'
24026 3' -59.7 NC_005262.1 + 51810 0.66 0.549181
Target:  5'- aCCGCCUCGGCgacgacuucaGCgCGGCcgacGUGCg -3'
miRNA:   3'- gGGCGGAGUUGg---------CGgGCCGcau-CACG- -5'
24026 3' -59.7 NC_005262.1 + 16396 0.66 0.549181
Target:  5'- aCCCGCCccggcCGGCCGCCgGGauuc-UGCg -3'
miRNA:   3'- -GGGCGGa----GUUGGCGGgCCgcaucACG- -5'
24026 3' -59.7 NC_005262.1 + 56015 0.66 0.549181
Target:  5'- gCCGcCCUCGAUCGCCggaCGGUcgacGUAcUGCg -3'
miRNA:   3'- gGGC-GGAGUUGGCGG---GCCG----CAUcACG- -5'
24026 3' -59.7 NC_005262.1 + 43921 0.66 0.538996
Target:  5'- aCCGCCgcgcgCGGCCgGCCC-GCGgccGUGUc -3'
miRNA:   3'- gGGCGGa----GUUGG-CGGGcCGCau-CACG- -5'
24026 3' -59.7 NC_005262.1 + 55017 0.66 0.528876
Target:  5'- -gCGCagCGACaCGCCCGGCagcGUcaGGUGCg -3'
miRNA:   3'- ggGCGgaGUUG-GCGGGCCG---CA--UCACG- -5'
24026 3' -59.7 NC_005262.1 + 55895 0.66 0.528876
Target:  5'- -aCGaCCUCGuaGCCGCCggCGGCGUucUGCu -3'
miRNA:   3'- ggGC-GGAGU--UGGCGG--GCCGCAucACG- -5'
24026 3' -59.7 NC_005262.1 + 9229 0.66 0.528876
Target:  5'- aUCCGCauucCGACCgGCCCGGCGccGGUc- -3'
miRNA:   3'- -GGGCGga--GUUGG-CGGGCCGCa-UCAcg -5'
24026 3' -59.7 NC_005262.1 + 26117 0.66 0.528876
Target:  5'- gCCGCggCgAGCUGCUgGGCGUAGUa- -3'
miRNA:   3'- gGGCGgaG-UUGGCGGgCCGCAUCAcg -5'
24026 3' -59.7 NC_005262.1 + 23342 0.66 0.528876
Target:  5'- -aCGCgCUCGACCacGgCCGGCGUGaaGCg -3'
miRNA:   3'- ggGCG-GAGUUGG--CgGGCCGCAUcaCG- -5'
24026 3' -59.7 NC_005262.1 + 16673 0.66 0.527868
Target:  5'- gCCGCCUCGACCagcacacgcgccuGCUCGGCaucc-GCg -3'
miRNA:   3'- gGGCGGAGUUGG-------------CGGGCCGcaucaCG- -5'
24026 3' -59.7 NC_005262.1 + 51200 0.67 0.518827
Target:  5'- gCCCGCUggAGCCGCgCgGGCGa--UGCu -3'
miRNA:   3'- -GGGCGGagUUGGCG-GgCCGCaucACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.