miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 20845 0.65 0.796117
Target:  5'- uCUCGuggcgcugggguuCGACC-GGGCAGGggucgagcuGCCGAGCGa -3'
miRNA:   3'- -GAGCu------------GCUGGaCUUGUUC---------CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 17515 0.66 0.790359
Target:  5'- aUCGGCaGCCUGAcgACGAuGCaCGGGCa -3'
miRNA:   3'- gAGCUGcUGGACU--UGUUcCG-GCUCGc -5'
24027 3' -55.2 NC_005262.1 + 57461 0.66 0.780635
Target:  5'- -gCGGCGGCgacGAugGAGGUCGAGgGc -3'
miRNA:   3'- gaGCUGCUGga-CUugUUCCGGCUCgC- -5'
24027 3' -55.2 NC_005262.1 + 54224 0.66 0.780635
Target:  5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3'
miRNA:   3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 660 0.66 0.780635
Target:  5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3'
miRNA:   3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 33905 0.66 0.780635
Target:  5'- -cCGGCGGCCcGAucgguagcgGCGGuGCCGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCU---------UGUUcCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 56121 0.66 0.780635
Target:  5'- uUCGuCGACCcGAcCGc-GCCGAGCGa -3'
miRNA:   3'- gAGCuGCUGGaCUuGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 29946 0.66 0.780635
Target:  5'- --gGACGACCcGGACGcGGGCgGcGGCGa -3'
miRNA:   3'- gagCUGCUGGaCUUGU-UCCGgC-UCGC- -5'
24027 3' -55.2 NC_005262.1 + 21647 0.66 0.780635
Target:  5'- -gCGACGGCCagauggUGAugAAGGacacgcgcaacCUGAGCGg -3'
miRNA:   3'- gaGCUGCUGG------ACUugUUCC-----------GGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 47428 0.66 0.779654
Target:  5'- gCUCGACGcccagaACCagcaGAACAAGGUCGcgaacgagcucgcAGCGa -3'
miRNA:   3'- -GAGCUGC------UGGa---CUUGUUCCGGC-------------UCGC- -5'
24027 3' -55.2 NC_005262.1 + 27640 0.66 0.770762
Target:  5'- -gCGGCGuCCUcgcCGGGGCUGAGCu -3'
miRNA:   3'- gaGCUGCuGGAcuuGUUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 57337 0.66 0.770762
Target:  5'- uCUgGGCGcGCCguucccgGAAC-AGGCUGAGCu -3'
miRNA:   3'- -GAgCUGC-UGGa------CUUGuUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 28627 0.66 0.770762
Target:  5'- --gGACGACgUGAACAAGcGCCugucgaaGGCGc -3'
miRNA:   3'- gagCUGCUGgACUUGUUC-CGGc------UCGC- -5'
24027 3' -55.2 NC_005262.1 + 43953 0.66 0.770762
Target:  5'- -gCGACGACgUGAGCAugaucuacgAGGCUcuGCGc -3'
miRNA:   3'- gaGCUGCUGgACUUGU---------UCCGGcuCGC- -5'
24027 3' -55.2 NC_005262.1 + 35803 0.66 0.769767
Target:  5'- gCUCGAuauCGACgC-GAACAgcaucauGGGCCgGAGCGg -3'
miRNA:   3'- -GAGCU---GCUG-GaCUUGU-------UCCGG-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 34059 0.66 0.76075
Target:  5'- gCUCGACGACCaGAACccggacuGGcacGCCGcGCGc -3'
miRNA:   3'- -GAGCUGCUGGaCUUGu------UC---CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 32791 0.66 0.76075
Target:  5'- gCUCGAUGAugucgcccaCCUGG---AGGCCG-GCGg -3'
miRNA:   3'- -GAGCUGCU---------GGACUuguUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 34421 0.66 0.76075
Target:  5'- gUCGAUGaacGCCUGAuaguGCAGGGC--GGCGa -3'
miRNA:   3'- gAGCUGC---UGGACU----UGUUCCGgcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 58801 0.66 0.757721
Target:  5'- gUCGACGACgUGAucggcgccgugaagGCAuGGCUGcuGCGg -3'
miRNA:   3'- gAGCUGCUGgACU--------------UGUuCCGGCu-CGC- -5'
24027 3' -55.2 NC_005262.1 + 56789 0.66 0.750611
Target:  5'- gCUgGcCGGCCUGAAggcCGAcGUCGAGCGg -3'
miRNA:   3'- -GAgCuGCUGGACUU---GUUcCGGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.