Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 3' | -55.2 | NC_005262.1 | + | 56845 | 0.7 | 0.547794 |
Target: 5'- -aCGACGACCaGAACAAGcuCCG-GCGu -3' miRNA: 3'- gaGCUGCUGGaCUUGUUCc-GGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 28712 | 0.71 | 0.495886 |
Target: 5'- aUCGACGAguuCCgccGCGAGGCCGcGCGc -3' miRNA: 3'- gAGCUGCU---GGacuUGUUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 31076 | 0.71 | 0.495886 |
Target: 5'- gCUCGcCGACCUGA---AGGgCGAGCc -3' miRNA: 3'- -GAGCuGCUGGACUuguUCCgGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 30523 | 0.71 | 0.485765 |
Target: 5'- gUCGcCGACCUGGGCGaagcaacgccgaAGGCCGAcacugGCa -3' miRNA: 3'- gAGCuGCUGGACUUGU------------UCCGGCU-----CGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17393 | 0.71 | 0.456017 |
Target: 5'- aCUCGGCGGCC--GACAAuGCCGAGaCGc -3' miRNA: 3'- -GAGCUGCUGGacUUGUUcCGGCUC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 60593 | 0.71 | 0.465826 |
Target: 5'- uCUUGGCGGCCUGcgccGCGcGGCCcGGCGu -3' miRNA: 3'- -GAGCUGCUGGACu---UGUuCCGGcUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 6389 | 0.72 | 0.433888 |
Target: 5'- --aGGCGGCCggcGAGCGcaagaaggcggcgaAGGCCGAGCu -3' miRNA: 3'- gagCUGCUGGa--CUUGU--------------UCCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33564 | 0.72 | 0.427278 |
Target: 5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3' miRNA: 3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 49651 | 0.72 | 0.417939 |
Target: 5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3' miRNA: 3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 52375 | 0.72 | 0.408725 |
Target: 5'- gCUgGACGcguACCUGAGCAAccuucuGGCCGAGaCGc -3' miRNA: 3'- -GAgCUGC---UGGACUUGUU------CCGGCUC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 16491 | 0.73 | 0.364616 |
Target: 5'- --gGACGAgCUGGGCGAGGCgcUGGGCGc -3' miRNA: 3'- gagCUGCUgGACUUGUUCCG--GCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 21231 | 0.73 | 0.389795 |
Target: 5'- uCUUGuCGACCUGAACGgcacgaAGGCggcgaucCGAGCGg -3' miRNA: 3'- -GAGCuGCUGGACUUGU------UCCG-------GCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 61556 | 0.73 | 0.399639 |
Target: 5'- uCUCGGCGAUCcgGGACGAGGCgGuGaCGg -3' miRNA: 3'- -GAGCUGCUGGa-CUUGUUCCGgCuC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 3482 | 0.73 | 0.38186 |
Target: 5'- uCUCGAUGuACCUGGACG-GGCacgGGGCGc -3' miRNA: 3'- -GAGCUGC-UGGACUUGUuCCGg--CUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 25684 | 0.73 | 0.356198 |
Target: 5'- gUCGACGGCCgagGGccGCGAGGgCGAGUu -3' miRNA: 3'- gAGCUGCUGGa--CU--UGUUCCgGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 51145 | 0.74 | 0.331772 |
Target: 5'- gCUCGACG-CCgUGAAgAAGucGCCGAGCGc -3' miRNA: 3'- -GAGCUGCuGG-ACUUgUUC--CGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 10231 | 0.74 | 0.339775 |
Target: 5'- -gCGACGACCgaucgauacaaGGACAAGGC-GAGCGg -3' miRNA: 3'- gaGCUGCUGGa----------CUUGUUCCGgCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 986 | 0.75 | 0.293852 |
Target: 5'- -gUGGCGACCU--GCGGGGCgGGGCGg -3' miRNA: 3'- gaGCUGCUGGAcuUGUUCCGgCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 43669 | 0.76 | 0.24035 |
Target: 5'- -gUGGCGACCUGAACGcaagccaagccGGGCCGAauucgcGCGg -3' miRNA: 3'- gaGCUGCUGGACUUGU-----------UCCGGCU------CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 39864 | 0.76 | 0.266014 |
Target: 5'- gUCGACGAgCU---CAAGGCCGAGCu -3' miRNA: 3'- gAGCUGCUgGAcuuGUUCCGGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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