miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 17393 0.71 0.456017
Target:  5'- aCUCGGCGGCC--GACAAuGCCGAGaCGc -3'
miRNA:   3'- -GAGCUGCUGGacUUGUUcCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 60593 0.71 0.465826
Target:  5'- uCUUGGCGGCCUGcgccGCGcGGCCcGGCGu -3'
miRNA:   3'- -GAGCUGCUGGACu---UGUuCCGGcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 28712 0.71 0.495886
Target:  5'- aUCGACGAguuCCgccGCGAGGCCGcGCGc -3'
miRNA:   3'- gAGCUGCU---GGacuUGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 31076 0.71 0.495886
Target:  5'- gCUCGcCGACCUGA---AGGgCGAGCc -3'
miRNA:   3'- -GAGCuGCUGGACUuguUCCgGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 27446 0.7 0.546737
Target:  5'- -aCGACGGCCUcggucggguucucGGGCAucuugaugAGGUCGAGCa -3'
miRNA:   3'- gaGCUGCUGGA-------------CUUGU--------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 29542 0.7 0.537258
Target:  5'- cCUCGGCGACCUGcGCcucuGCCGcAGCc -3'
miRNA:   3'- -GAGCUGCUGGACuUGuuc-CGGC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 24992 0.7 0.537258
Target:  5'- cCUCGGCGuCCUccgGCu-GGCCGAGCu -3'
miRNA:   3'- -GAGCUGCuGGAcu-UGuuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 52711 0.7 0.526793
Target:  5'- -cCGACG-CC-GGACGAGGCCGcGCu -3'
miRNA:   3'- gaGCUGCuGGaCUUGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 56845 0.7 0.547794
Target:  5'- -aCGACGACCaGAACAAGcuCCG-GCGu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUUCc-GGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 13320 0.7 0.558394
Target:  5'- cCUUGACcACCUGAAgAAGGUCG-GCc -3'
miRNA:   3'- -GAGCUGcUGGACUUgUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 22340 0.69 0.612098
Target:  5'- -gCGACGGCgUGAuGCGcAGGCCGgccGGCGu -3'
miRNA:   3'- gaGCUGCUGgACU-UGU-UCCGGC---UCGC- -5'
24027 3' -55.2 NC_005262.1 + 25748 0.69 0.611016
Target:  5'- aCUCGAUGACCaGAaugcccgacuucgGCAcGGCCGGGaUGg -3'
miRNA:   3'- -GAGCUGCUGGaCU-------------UGUuCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 17760 0.69 0.569051
Target:  5'- --gGACGACacgCUGcucgaauuCGAGGCCGAGCGc -3'
miRNA:   3'- gagCUGCUG---GACuu------GUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 54913 0.69 0.569051
Target:  5'- uUCGACGgcucgcACCUG-ACGcuGCCGGGCGu -3'
miRNA:   3'- gAGCUGC------UGGACuUGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 56911 0.69 0.579758
Target:  5'- gCUCGcCGGCgaGAuCAAGGCCGcGCu -3'
miRNA:   3'- -GAGCuGCUGgaCUuGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 2645 0.69 0.579758
Target:  5'- aUCGGCccauGCCUGcGCGGcGCCGGGCGg -3'
miRNA:   3'- gAGCUGc---UGGACuUGUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 29128 0.68 0.666208
Target:  5'- -aCGAaGGCC-GAcuucaucaucgACGAGGCCGAGUGg -3'
miRNA:   3'- gaGCUgCUGGaCU-----------UGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 48891 0.68 0.644588
Target:  5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5'
24027 3' -55.2 NC_005262.1 + 24533 0.68 0.666208
Target:  5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3'
miRNA:   3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 40423 0.68 0.666208
Target:  5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3'
miRNA:   3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.