Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24027 | 3' | -55.2 | NC_005262.1 | + | 48891 | 0.68 | 0.644588 |
Target: 5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3' miRNA: 3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 5856 | 0.68 | 0.629423 |
Target: 5'- --aGAUGGCCUGuuuccggauggccGCGAGGCCGuGCu -3' miRNA: 3'- gagCUGCUGGACu------------UGUUCCGGCuCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17158 | 0.68 | 0.676977 |
Target: 5'- aUCGAgaaGGCCg--GCAAGGCCGcGCGc -3' miRNA: 3'- gAGCUg--CUGGacuUGUUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 27744 | 0.68 | 0.644588 |
Target: 5'- aUCGACGAgCUGAaggagcguggACAGGcGCCGAcCGu -3' miRNA: 3'- gAGCUGCUgGACU----------UGUUC-CGGCUcGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 40423 | 0.68 | 0.666208 |
Target: 5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3' miRNA: 3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 24533 | 0.68 | 0.666208 |
Target: 5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3' miRNA: 3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 48692 | 0.67 | 0.698381 |
Target: 5'- cCUCGuCGAgCUGcgauuGC-AGGCCGAGgCGg -3' miRNA: 3'- -GAGCuGCUgGACu----UGuUCCGGCUC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 35233 | 0.67 | 0.687705 |
Target: 5'- gUCGGCGGCgCgaucGGCAGcGGCUGGGCGc -3' miRNA: 3'- gAGCUGCUG-Gac--UUGUU-CCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 51819 | 0.67 | 0.687705 |
Target: 5'- -gCGACGACUUcAGCGcGGCCGAcguGCGc -3' miRNA: 3'- gaGCUGCUGGAcUUGUuCCGGCU---CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 2752 | 0.67 | 0.740354 |
Target: 5'- -aCGGCGGCCaGGACGccGCCcGGCGc -3' miRNA: 3'- gaGCUGCUGGaCUUGUucCGGcUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 16085 | 0.67 | 0.719536 |
Target: 5'- -aUGACGaACCUGAAC--GGCgCGGGCc -3' miRNA: 3'- gaGCUGC-UGGACUUGuuCCG-GCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 40322 | 0.67 | 0.729992 |
Target: 5'- -cCGGCGACCgcuucGAGCAucggcucacGGCCGGcGCGc -3' miRNA: 3'- gaGCUGCUGGa----CUUGUu--------CCGGCU-CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 30865 | 0.67 | 0.729992 |
Target: 5'- -aUGACGGCCgagGAGuc--GCCGAGCGg -3' miRNA: 3'- gaGCUGCUGGa--CUUguucCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 50131 | 0.67 | 0.740354 |
Target: 5'- gCUCGcUGACCgagugGAGCGAGcCUGAGCu -3' miRNA: 3'- -GAGCuGCUGGa----CUUGUUCcGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 3775 | 0.67 | 0.740354 |
Target: 5'- uUCGACGAUgaGAACGGaGCCGGuCGg -3' miRNA: 3'- gAGCUGCUGgaCUUGUUcCGGCUcGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 55738 | 0.67 | 0.687705 |
Target: 5'- -cCGGCGugCcGGACGcGGCCacGAGCGc -3' miRNA: 3'- gaGCUGCugGaCUUGUuCCGG--CUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 49703 | 0.67 | 0.729992 |
Target: 5'- -cCGAgcGCCUGGuuaGCGAcgucgcGGCCGAGCGa -3' miRNA: 3'- gaGCUgcUGGACU---UGUU------CCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33652 | 0.67 | 0.687705 |
Target: 5'- uCUCGcCGGCCUcGAGCuc-GUCGAGCa -3' miRNA: 3'- -GAGCuGCUGGA-CUUGuucCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 26349 | 0.67 | 0.716382 |
Target: 5'- gUCGuGCGGCagGAACAucgugucccacacgAGGCCGAGCc -3' miRNA: 3'- gAGC-UGCUGgaCUUGU--------------UCCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 55258 | 0.67 | 0.708995 |
Target: 5'- gCUCGuccGCGACCaUGAuguuCGcGGCCGGGUa -3' miRNA: 3'- -GAGC---UGCUGG-ACUu---GUuCCGGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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