miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 40423 0.68 0.666208
Target:  5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3'
miRNA:   3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5'
24027 3' -55.2 NC_005262.1 + 46562 0.68 0.666208
Target:  5'- gUCGACGGgCUGcguCGuGGCCGGcGCGg -3'
miRNA:   3'- gAGCUGCUgGACuu-GUuCCGGCU-CGC- -5'
24027 3' -55.2 NC_005262.1 + 35066 0.68 0.666208
Target:  5'- -cCGGCuGCCUGGAgcuuCGAcuugcGGCCGAGCGc -3'
miRNA:   3'- gaGCUGcUGGACUU----GUU-----CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 24533 0.68 0.666208
Target:  5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3'
miRNA:   3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 17707 0.68 0.676977
Target:  5'- gUCGcUGGCCcGAACGAGcCCGAGCc -3'
miRNA:   3'- gAGCuGCUGGaCUUGUUCcGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 17158 0.68 0.676977
Target:  5'- aUCGAgaaGGCCg--GCAAGGCCGcGCGc -3'
miRNA:   3'- gAGCUg--CUGGacuUGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 33652 0.67 0.687705
Target:  5'- uCUCGcCGGCCUcGAGCuc-GUCGAGCa -3'
miRNA:   3'- -GAGCuGCUGGA-CUUGuucCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 55738 0.67 0.687705
Target:  5'- -cCGGCGugCcGGACGcGGCCacGAGCGc -3'
miRNA:   3'- gaGCUGCugGaCUUGUuCCGG--CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 51819 0.67 0.687705
Target:  5'- -gCGACGACUUcAGCGcGGCCGAcguGCGc -3'
miRNA:   3'- gaGCUGCUGGAcUUGUuCCGGCU---CGC- -5'
24027 3' -55.2 NC_005262.1 + 35233 0.67 0.687705
Target:  5'- gUCGGCGGCgCgaucGGCAGcGGCUGGGCGc -3'
miRNA:   3'- gAGCUGCUG-Gac--UUGUU-CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 50890 0.67 0.698381
Target:  5'- -aCGGCGcgccgucaaucACCUGAacgcGCAGGGCauCGAGCa -3'
miRNA:   3'- gaGCUGC-----------UGGACU----UGUUCCG--GCUCGc -5'
24027 3' -55.2 NC_005262.1 + 48692 0.67 0.698381
Target:  5'- cCUCGuCGAgCUGcgauuGC-AGGCCGAGgCGg -3'
miRNA:   3'- -GAGCuGCUgGACu----UGuUCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 29260 0.67 0.698381
Target:  5'- gCUCGGCGacggccGCCUGAcGCAuGGUCGcGCGc -3'
miRNA:   3'- -GAGCUGC------UGGACU-UGUuCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 55258 0.67 0.708995
Target:  5'- gCUCGuccGCGACCaUGAuguuCGcGGCCGGGUa -3'
miRNA:   3'- -GAGC---UGCUGG-ACUu---GUuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 26349 0.67 0.716382
Target:  5'- gUCGuGCGGCagGAACAucgugucccacacgAGGCCGAGCc -3'
miRNA:   3'- gAGC-UGCUGgaCUUGU--------------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 49684 0.67 0.719536
Target:  5'- gUCGGCGgcgcgcgcaACCUGAaccGCGAcggcGuGCCGGGCGg -3'
miRNA:   3'- gAGCUGC---------UGGACU---UGUU----C-CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 16085 0.67 0.719536
Target:  5'- -aUGACGaACCUGAAC--GGCgCGGGCc -3'
miRNA:   3'- gaGCUGC-UGGACUUGuuCCG-GCUCGc -5'
24027 3' -55.2 NC_005262.1 + 40322 0.67 0.729992
Target:  5'- -cCGGCGACCgcuucGAGCAucggcucacGGCCGGcGCGc -3'
miRNA:   3'- gaGCUGCUGGa----CUUGUu--------CCGGCU-CGC- -5'
24027 3' -55.2 NC_005262.1 + 30865 0.67 0.729992
Target:  5'- -aUGACGGCCgagGAGuc--GCCGAGCGg -3'
miRNA:   3'- gaGCUGCUGGa--CUUguucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 49703 0.67 0.729992
Target:  5'- -cCGAgcGCCUGGuuaGCGAcgucgcGGCCGAGCGa -3'
miRNA:   3'- gaGCUgcUGGACU---UGUU------CCGGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.