Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 3' | -55.2 | NC_005262.1 | + | 20845 | 0.65 | 0.796117 |
Target: 5'- uCUCGuggcgcugggguuCGACC-GGGCAGGggucgagcuGCCGAGCGa -3' miRNA: 3'- -GAGCu------------GCUGGaCUUGUUC---------CGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17515 | 0.66 | 0.790359 |
Target: 5'- aUCGGCaGCCUGAcgACGAuGCaCGGGCa -3' miRNA: 3'- gAGCUGcUGGACU--UGUUcCG-GCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 57461 | 0.66 | 0.780635 |
Target: 5'- -gCGGCGGCgacGAugGAGGUCGAGgGc -3' miRNA: 3'- gaGCUGCUGga-CUugUUCCGGCUCgC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 54224 | 0.66 | 0.780635 |
Target: 5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3' miRNA: 3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 660 | 0.66 | 0.780635 |
Target: 5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3' miRNA: 3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33905 | 0.66 | 0.780635 |
Target: 5'- -cCGGCGGCCcGAucgguagcgGCGGuGCCGAGCu -3' miRNA: 3'- gaGCUGCUGGaCU---------UGUUcCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 56121 | 0.66 | 0.780635 |
Target: 5'- uUCGuCGACCcGAcCGc-GCCGAGCGa -3' miRNA: 3'- gAGCuGCUGGaCUuGUucCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 29946 | 0.66 | 0.780635 |
Target: 5'- --gGACGACCcGGACGcGGGCgGcGGCGa -3' miRNA: 3'- gagCUGCUGGaCUUGU-UCCGgC-UCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 21647 | 0.66 | 0.780635 |
Target: 5'- -gCGACGGCCagauggUGAugAAGGacacgcgcaacCUGAGCGg -3' miRNA: 3'- gaGCUGCUGG------ACUugUUCC-----------GGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 47428 | 0.66 | 0.779654 |
Target: 5'- gCUCGACGcccagaACCagcaGAACAAGGUCGcgaacgagcucgcAGCGa -3' miRNA: 3'- -GAGCUGC------UGGa---CUUGUUCCGGC-------------UCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 27640 | 0.66 | 0.770762 |
Target: 5'- -gCGGCGuCCUcgcCGGGGCUGAGCu -3' miRNA: 3'- gaGCUGCuGGAcuuGUUCCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 57337 | 0.66 | 0.770762 |
Target: 5'- uCUgGGCGcGCCguucccgGAAC-AGGCUGAGCu -3' miRNA: 3'- -GAgCUGC-UGGa------CUUGuUCCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 28627 | 0.66 | 0.770762 |
Target: 5'- --gGACGACgUGAACAAGcGCCugucgaaGGCGc -3' miRNA: 3'- gagCUGCUGgACUUGUUC-CGGc------UCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 43953 | 0.66 | 0.770762 |
Target: 5'- -gCGACGACgUGAGCAugaucuacgAGGCUcuGCGc -3' miRNA: 3'- gaGCUGCUGgACUUGU---------UCCGGcuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 35803 | 0.66 | 0.769767 |
Target: 5'- gCUCGAuauCGACgC-GAACAgcaucauGGGCCgGAGCGg -3' miRNA: 3'- -GAGCU---GCUG-GaCUUGU-------UCCGG-CUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 34059 | 0.66 | 0.76075 |
Target: 5'- gCUCGACGACCaGAACccggacuGGcacGCCGcGCGc -3' miRNA: 3'- -GAGCUGCUGGaCUUGu------UC---CGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 32791 | 0.66 | 0.76075 |
Target: 5'- gCUCGAUGAugucgcccaCCUGG---AGGCCG-GCGg -3' miRNA: 3'- -GAGCUGCU---------GGACUuguUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 34421 | 0.66 | 0.76075 |
Target: 5'- gUCGAUGaacGCCUGAuaguGCAGGGC--GGCGa -3' miRNA: 3'- gAGCUGC---UGGACU----UGUUCCGgcUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 58801 | 0.66 | 0.757721 |
Target: 5'- gUCGACGACgUGAucggcgccgugaagGCAuGGCUGcuGCGg -3' miRNA: 3'- gAGCUGCUGgACU--------------UGUuCCGGCu-CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 56789 | 0.66 | 0.750611 |
Target: 5'- gCUgGcCGGCCUGAAggcCGAcGUCGAGCGg -3' miRNA: 3'- -GAgCuGCUGGACUU---GUUcCGGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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