miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 660 0.66 0.780635
Target:  5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3'
miRNA:   3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 986 0.75 0.293852
Target:  5'- -gUGGCGACCU--GCGGGGCgGGGCGg -3'
miRNA:   3'- gaGCUGCUGGAcuUGUUCCGgCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 2645 0.69 0.579758
Target:  5'- aUCGGCccauGCCUGcGCGGcGCCGGGCGg -3'
miRNA:   3'- gAGCUGc---UGGACuUGUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 2752 0.67 0.740354
Target:  5'- -aCGGCGGCCaGGACGccGCCcGGCGc -3'
miRNA:   3'- gaGCUGCUGGaCUUGUucCGGcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 3482 0.73 0.38186
Target:  5'- uCUCGAUGuACCUGGACG-GGCacgGGGCGc -3'
miRNA:   3'- -GAGCUGC-UGGACUUGUuCCGg--CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 3775 0.67 0.740354
Target:  5'- uUCGACGAUgaGAACGGaGCCGGuCGg -3'
miRNA:   3'- gAGCUGCUGgaCUUGUUcCGGCUcGC- -5'
24027 3' -55.2 NC_005262.1 + 3813 0.8 0.145377
Target:  5'- cCUCGACGGCCcgGAGgAAGguGCCGAGCGc -3'
miRNA:   3'- -GAGCUGCUGGa-CUUgUUC--CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 5856 0.68 0.629423
Target:  5'- --aGAUGGCCUGuuuccggauggccGCGAGGCCGuGCu -3'
miRNA:   3'- gagCUGCUGGACu------------UGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 6389 0.72 0.433888
Target:  5'- --aGGCGGCCggcGAGCGcaagaaggcggcgaAGGCCGAGCu -3'
miRNA:   3'- gagCUGCUGGa--CUUGU--------------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 10231 0.74 0.339775
Target:  5'- -gCGACGACCgaucgauacaaGGACAAGGC-GAGCGg -3'
miRNA:   3'- gaGCUGCUGGa----------CUUGUUCCGgCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 13320 0.7 0.558394
Target:  5'- cCUUGACcACCUGAAgAAGGUCG-GCc -3'
miRNA:   3'- -GAGCUGcUGGACUUgUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 16085 0.67 0.719536
Target:  5'- -aUGACGaACCUGAAC--GGCgCGGGCc -3'
miRNA:   3'- gaGCUGC-UGGACUUGuuCCG-GCUCGc -5'
24027 3' -55.2 NC_005262.1 + 16491 0.73 0.364616
Target:  5'- --gGACGAgCUGGGCGAGGCgcUGGGCGc -3'
miRNA:   3'- gagCUGCUgGACUUGUUCCG--GCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 17158 0.68 0.676977
Target:  5'- aUCGAgaaGGCCg--GCAAGGCCGcGCGc -3'
miRNA:   3'- gAGCUg--CUGGacuUGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 17393 0.71 0.456017
Target:  5'- aCUCGGCGGCC--GACAAuGCCGAGaCGc -3'
miRNA:   3'- -GAGCUGCUGGacUUGUUcCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 17515 0.66 0.790359
Target:  5'- aUCGGCaGCCUGAcgACGAuGCaCGGGCa -3'
miRNA:   3'- gAGCUGcUGGACU--UGUUcCG-GCUCGc -5'
24027 3' -55.2 NC_005262.1 + 17707 0.68 0.676977
Target:  5'- gUCGcUGGCCcGAACGAGcCCGAGCc -3'
miRNA:   3'- gAGCuGCUGGaCUUGUUCcGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 17760 0.69 0.569051
Target:  5'- --gGACGACacgCUGcucgaauuCGAGGCCGAGCGc -3'
miRNA:   3'- gagCUGCUG---GACuu------GUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 20845 0.65 0.796117
Target:  5'- uCUCGuggcgcugggguuCGACC-GGGCAGGggucgagcuGCCGAGCGa -3'
miRNA:   3'- -GAGCu------------GCUGGaCUUGUUC---------CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 21231 0.73 0.389795
Target:  5'- uCUUGuCGACCUGAACGgcacgaAGGCggcgaucCGAGCGg -3'
miRNA:   3'- -GAGCuGCUGGACUUGU------UCCG-------GCUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.