miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 21647 0.66 0.780635
Target:  5'- -gCGACGGCCagauggUGAugAAGGacacgcgcaacCUGAGCGg -3'
miRNA:   3'- gaGCUGCUGG------ACUugUUCC-----------GGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 22340 0.69 0.612098
Target:  5'- -gCGACGGCgUGAuGCGcAGGCCGgccGGCGu -3'
miRNA:   3'- gaGCUGCUGgACU-UGU-UCCGGC---UCGC- -5'
24027 3' -55.2 NC_005262.1 + 23466 0.77 0.216786
Target:  5'- -gCG-CGGCCUGGACGAauGGCUGGGCGa -3'
miRNA:   3'- gaGCuGCUGGACUUGUU--CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 24462 0.66 0.750611
Target:  5'- aUCGAUGGCgCU--GCAcGGCaCGAGCGu -3'
miRNA:   3'- gAGCUGCUG-GAcuUGUuCCG-GCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 24533 0.68 0.666208
Target:  5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3'
miRNA:   3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 24992 0.7 0.537258
Target:  5'- cCUCGGCGuCCUccgGCu-GGCCGAGCu -3'
miRNA:   3'- -GAGCUGCuGGAcu-UGuuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 25684 0.73 0.356198
Target:  5'- gUCGACGGCCgagGGccGCGAGGgCGAGUu -3'
miRNA:   3'- gAGCUGCUGGa--CU--UGUUCCgGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 25748 0.69 0.611016
Target:  5'- aCUCGAUGACCaGAaugcccgacuucgGCAcGGCCGGGaUGg -3'
miRNA:   3'- -GAGCUGCUGGaCU-------------UGUuCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 26349 0.67 0.716382
Target:  5'- gUCGuGCGGCagGAACAucgugucccacacgAGGCCGAGCc -3'
miRNA:   3'- gAGC-UGCUGgaCUUGU--------------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 26906 0.77 0.205763
Target:  5'- gUCG-CGGCCUcGAauuccgauGCAAGGCCGGGCGc -3'
miRNA:   3'- gAGCuGCUGGA-CU--------UGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 27446 0.7 0.546737
Target:  5'- -aCGACGGCCUcggucggguucucGGGCAucuugaugAGGUCGAGCa -3'
miRNA:   3'- gaGCUGCUGGA-------------CUUGU--------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 27640 0.66 0.770762
Target:  5'- -gCGGCGuCCUcgcCGGGGCUGAGCu -3'
miRNA:   3'- gaGCUGCuGGAcuuGUUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 27690 0.78 0.175567
Target:  5'- gCUCGACGGCCUGuuCGcuGUCGAGCGg -3'
miRNA:   3'- -GAGCUGCUGGACuuGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 27744 0.68 0.644588
Target:  5'- aUCGACGAgCUGAaggagcguggACAGGcGCCGAcCGu -3'
miRNA:   3'- gAGCUGCUgGACU----------UGUUC-CGGCUcGC- -5'
24027 3' -55.2 NC_005262.1 + 28627 0.66 0.770762
Target:  5'- --gGACGACgUGAACAAGcGCCugucgaaGGCGc -3'
miRNA:   3'- gagCUGCUGgACUUGUUC-CGGc------UCGC- -5'
24027 3' -55.2 NC_005262.1 + 28712 0.71 0.495886
Target:  5'- aUCGACGAguuCCgccGCGAGGCCGcGCGc -3'
miRNA:   3'- gAGCUGCU---GGacuUGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 29128 0.68 0.666208
Target:  5'- -aCGAaGGCC-GAcuucaucaucgACGAGGCCGAGUGg -3'
miRNA:   3'- gaGCUgCUGGaCU-----------UGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 29260 0.67 0.698381
Target:  5'- gCUCGGCGacggccGCCUGAcGCAuGGUCGcGCGc -3'
miRNA:   3'- -GAGCUGC------UGGACU-UGUuCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 29542 0.7 0.537258
Target:  5'- cCUCGGCGACCUGcGCcucuGCCGcAGCc -3'
miRNA:   3'- -GAGCUGCUGGACuUGuuc-CGGC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 29946 0.66 0.780635
Target:  5'- --gGACGACCcGGACGcGGGCgGcGGCGa -3'
miRNA:   3'- gagCUGCUGGaCUUGU-UCCGgC-UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.