miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 30261 1.1 0.001218
Target:  5'- gCUCGACGACCUGAACAAGGCCGAGCGg -3'
miRNA:   3'- -GAGCUGCUGGACUUGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 30523 0.71 0.485765
Target:  5'- gUCGcCGACCUGGGCGaagcaacgccgaAGGCCGAcacugGCa -3'
miRNA:   3'- gAGCuGCUGGACUUGU------------UCCGGCU-----CGc -5'
24027 3' -55.2 NC_005262.1 + 30865 0.67 0.729992
Target:  5'- -aUGACGGCCgagGAGuc--GCCGAGCGg -3'
miRNA:   3'- gaGCUGCUGGa--CUUguucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 31076 0.71 0.495886
Target:  5'- gCUCGcCGACCUGA---AGGgCGAGCc -3'
miRNA:   3'- -GAGCuGCUGGACUuguUCCgGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 32791 0.66 0.76075
Target:  5'- gCUCGAUGAugucgcccaCCUGG---AGGCCG-GCGg -3'
miRNA:   3'- -GAGCUGCU---------GGACUuguUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 33564 0.72 0.427278
Target:  5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3'
miRNA:   3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 33652 0.67 0.687705
Target:  5'- uCUCGcCGGCCUcGAGCuc-GUCGAGCa -3'
miRNA:   3'- -GAGCuGCUGGA-CUUGuucCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 33905 0.66 0.780635
Target:  5'- -cCGGCGGCCcGAucgguagcgGCGGuGCCGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCU---------UGUUcCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 34059 0.66 0.76075
Target:  5'- gCUCGACGACCaGAACccggacuGGcacGCCGcGCGc -3'
miRNA:   3'- -GAGCUGCUGGaCUUGu------UC---CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 34421 0.66 0.76075
Target:  5'- gUCGAUGaacGCCUGAuaguGCAGGGC--GGCGa -3'
miRNA:   3'- gAGCUGC---UGGACU----UGUUCCGgcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 35066 0.68 0.666208
Target:  5'- -cCGGCuGCCUGGAgcuuCGAcuugcGGCCGAGCGc -3'
miRNA:   3'- gaGCUGcUGGACUU----GUU-----CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 35233 0.67 0.687705
Target:  5'- gUCGGCGGCgCgaucGGCAGcGGCUGGGCGc -3'
miRNA:   3'- gAGCUGCUG-Gac--UUGUU-CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 35803 0.66 0.769767
Target:  5'- gCUCGAuauCGACgC-GAACAgcaucauGGGCCgGAGCGg -3'
miRNA:   3'- -GAGCU---GCUG-GaCUUGU-------UCCGG-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 39864 0.76 0.266014
Target:  5'- gUCGACGAgCU---CAAGGCCGAGCu -3'
miRNA:   3'- gAGCUGCUgGAcuuGUUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 40322 0.67 0.729992
Target:  5'- -cCGGCGACCgcuucGAGCAucggcucacGGCCGGcGCGc -3'
miRNA:   3'- gaGCUGCUGGa----CUUGUu--------CCGGCU-CGC- -5'
24027 3' -55.2 NC_005262.1 + 40423 0.68 0.666208
Target:  5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3'
miRNA:   3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5'
24027 3' -55.2 NC_005262.1 + 43669 0.76 0.24035
Target:  5'- -gUGGCGACCUGAACGcaagccaagccGGGCCGAauucgcGCGg -3'
miRNA:   3'- gaGCUGCUGGACUUGU-----------UCCGGCU------CGC- -5'
24027 3' -55.2 NC_005262.1 + 43953 0.66 0.770762
Target:  5'- -gCGACGACgUGAGCAugaucuacgAGGCUcuGCGc -3'
miRNA:   3'- gaGCUGCUGgACUUGU---------UCCGGcuCGC- -5'
24027 3' -55.2 NC_005262.1 + 46562 0.68 0.666208
Target:  5'- gUCGACGGgCUGcguCGuGGCCGGcGCGg -3'
miRNA:   3'- gAGCUGCUgGACuu-GUuCCGGCU-CGC- -5'
24027 3' -55.2 NC_005262.1 + 47428 0.66 0.779654
Target:  5'- gCUCGACGcccagaACCagcaGAACAAGGUCGcgaacgagcucgcAGCGa -3'
miRNA:   3'- -GAGCUGC------UGGa---CUUGUUCCGGC-------------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.