miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 48692 0.67 0.698381
Target:  5'- cCUCGuCGAgCUGcgauuGC-AGGCCGAGgCGg -3'
miRNA:   3'- -GAGCuGCUgGACu----UGuUCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 48891 0.68 0.644588
Target:  5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5'
24027 3' -55.2 NC_005262.1 + 49651 0.72 0.417939
Target:  5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3'
miRNA:   3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 49684 0.67 0.719536
Target:  5'- gUCGGCGgcgcgcgcaACCUGAaccGCGAcggcGuGCCGGGCGg -3'
miRNA:   3'- gAGCUGC---------UGGACU---UGUU----C-CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 49703 0.67 0.729992
Target:  5'- -cCGAgcGCCUGGuuaGCGAcgucgcGGCCGAGCGa -3'
miRNA:   3'- gaGCUgcUGGACU---UGUU------CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 50131 0.67 0.740354
Target:  5'- gCUCGcUGACCgagugGAGCGAGcCUGAGCu -3'
miRNA:   3'- -GAGCuGCUGGa----CUUGUUCcGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 50890 0.67 0.698381
Target:  5'- -aCGGCGcgccgucaaucACCUGAacgcGCAGGGCauCGAGCa -3'
miRNA:   3'- gaGCUGC-----------UGGACU----UGUUCCG--GCUCGc -5'
24027 3' -55.2 NC_005262.1 + 51145 0.74 0.331772
Target:  5'- gCUCGACG-CCgUGAAgAAGucGCCGAGCGc -3'
miRNA:   3'- -GAGCUGCuGG-ACUUgUUC--CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 51235 0.66 0.750611
Target:  5'- gCUCGGCGACUUcuucACGGcGUCGAGCGc -3'
miRNA:   3'- -GAGCUGCUGGAcu--UGUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 51819 0.67 0.687705
Target:  5'- -gCGACGACUUcAGCGcGGCCGAcguGCGc -3'
miRNA:   3'- gaGCUGCUGGAcUUGUuCCGGCU---CGC- -5'
24027 3' -55.2 NC_005262.1 + 52375 0.72 0.408725
Target:  5'- gCUgGACGcguACCUGAGCAAccuucuGGCCGAGaCGc -3'
miRNA:   3'- -GAgCUGC---UGGACUUGUU------CCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 52711 0.7 0.526793
Target:  5'- -cCGACG-CC-GGACGAGGCCGcGCu -3'
miRNA:   3'- gaGCUGCuGGaCUUGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 54224 0.66 0.780635
Target:  5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3'
miRNA:   3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 54913 0.69 0.569051
Target:  5'- uUCGACGgcucgcACCUG-ACGcuGCCGGGCGu -3'
miRNA:   3'- gAGCUGC------UGGACuUGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 55258 0.67 0.708995
Target:  5'- gCUCGuccGCGACCaUGAuguuCGcGGCCGGGUa -3'
miRNA:   3'- -GAGC---UGCUGG-ACUu---GUuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 55738 0.67 0.687705
Target:  5'- -cCGGCGugCcGGACGcGGCCacGAGCGc -3'
miRNA:   3'- gaGCUGCugGaCUUGUuCCGG--CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 56121 0.66 0.780635
Target:  5'- uUCGuCGACCcGAcCGc-GCCGAGCGa -3'
miRNA:   3'- gAGCuGCUGGaCUuGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 56789 0.66 0.750611
Target:  5'- gCUgGcCGGCCUGAAggcCGAcGUCGAGCGg -3'
miRNA:   3'- -GAgCuGCUGGACUU---GUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 56845 0.7 0.547794
Target:  5'- -aCGACGACCaGAACAAGcuCCG-GCGu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUUCc-GGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 56911 0.69 0.579758
Target:  5'- gCUCGcCGGCgaGAuCAAGGCCGcGCu -3'
miRNA:   3'- -GAGCuGCUGgaCUuGUUCCGGCuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.