Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 3' | -55.2 | NC_005262.1 | + | 49703 | 0.67 | 0.729992 |
Target: 5'- -cCGAgcGCCUGGuuaGCGAcgucgcGGCCGAGCGa -3' miRNA: 3'- gaGCUgcUGGACU---UGUU------CCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 49684 | 0.67 | 0.719536 |
Target: 5'- gUCGGCGgcgcgcgcaACCUGAaccGCGAcggcGuGCCGGGCGg -3' miRNA: 3'- gAGCUGC---------UGGACU---UGUU----C-CGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 49651 | 0.72 | 0.417939 |
Target: 5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3' miRNA: 3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 48891 | 0.68 | 0.644588 |
Target: 5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3' miRNA: 3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 48692 | 0.67 | 0.698381 |
Target: 5'- cCUCGuCGAgCUGcgauuGC-AGGCCGAGgCGg -3' miRNA: 3'- -GAGCuGCUgGACu----UGuUCCGGCUC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 47428 | 0.66 | 0.779654 |
Target: 5'- gCUCGACGcccagaACCagcaGAACAAGGUCGcgaacgagcucgcAGCGa -3' miRNA: 3'- -GAGCUGC------UGGa---CUUGUUCCGGC-------------UCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 46562 | 0.68 | 0.666208 |
Target: 5'- gUCGACGGgCUGcguCGuGGCCGGcGCGg -3' miRNA: 3'- gAGCUGCUgGACuu-GUuCCGGCU-CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 43953 | 0.66 | 0.770762 |
Target: 5'- -gCGACGACgUGAGCAugaucuacgAGGCUcuGCGc -3' miRNA: 3'- gaGCUGCUGgACUUGU---------UCCGGcuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 43669 | 0.76 | 0.24035 |
Target: 5'- -gUGGCGACCUGAACGcaagccaagccGGGCCGAauucgcGCGg -3' miRNA: 3'- gaGCUGCUGGACUUGU-----------UCCGGCU------CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 40423 | 0.68 | 0.666208 |
Target: 5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3' miRNA: 3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 40322 | 0.67 | 0.729992 |
Target: 5'- -cCGGCGACCgcuucGAGCAucggcucacGGCCGGcGCGc -3' miRNA: 3'- gaGCUGCUGGa----CUUGUu--------CCGGCU-CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 39864 | 0.76 | 0.266014 |
Target: 5'- gUCGACGAgCU---CAAGGCCGAGCu -3' miRNA: 3'- gAGCUGCUgGAcuuGUUCCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 35803 | 0.66 | 0.769767 |
Target: 5'- gCUCGAuauCGACgC-GAACAgcaucauGGGCCgGAGCGg -3' miRNA: 3'- -GAGCU---GCUG-GaCUUGU-------UCCGG-CUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 35233 | 0.67 | 0.687705 |
Target: 5'- gUCGGCGGCgCgaucGGCAGcGGCUGGGCGc -3' miRNA: 3'- gAGCUGCUG-Gac--UUGUU-CCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 35066 | 0.68 | 0.666208 |
Target: 5'- -cCGGCuGCCUGGAgcuuCGAcuugcGGCCGAGCGc -3' miRNA: 3'- gaGCUGcUGGACUU----GUU-----CCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 34421 | 0.66 | 0.76075 |
Target: 5'- gUCGAUGaacGCCUGAuaguGCAGGGC--GGCGa -3' miRNA: 3'- gAGCUGC---UGGACU----UGUUCCGgcUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 34059 | 0.66 | 0.76075 |
Target: 5'- gCUCGACGACCaGAACccggacuGGcacGCCGcGCGc -3' miRNA: 3'- -GAGCUGCUGGaCUUGu------UC---CGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33905 | 0.66 | 0.780635 |
Target: 5'- -cCGGCGGCCcGAucgguagcgGCGGuGCCGAGCu -3' miRNA: 3'- gaGCUGCUGGaCU---------UGUUcCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33652 | 0.67 | 0.687705 |
Target: 5'- uCUCGcCGGCCUcGAGCuc-GUCGAGCa -3' miRNA: 3'- -GAGCuGCUGGA-CUUGuucCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33564 | 0.72 | 0.427278 |
Target: 5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3' miRNA: 3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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