miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 56845 0.7 0.547794
Target:  5'- -aCGACGACCaGAACAAGcuCCG-GCGu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUUCc-GGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 52711 0.7 0.526793
Target:  5'- -cCGACG-CC-GGACGAGGCCGcGCu -3'
miRNA:   3'- gaGCUGCuGGaCUUGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 25684 0.73 0.356198
Target:  5'- gUCGACGGCCgagGGccGCGAGGgCGAGUu -3'
miRNA:   3'- gAGCUGCUGGa--CU--UGUUCCgGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 10231 0.74 0.339775
Target:  5'- -gCGACGACCgaucgauacaaGGACAAGGC-GAGCGg -3'
miRNA:   3'- gaGCUGCUGGa----------CUUGUUCCGgCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 51145 0.74 0.331772
Target:  5'- gCUCGACG-CCgUGAAgAAGucGCCGAGCGc -3'
miRNA:   3'- -GAGCUGCuGG-ACUUgUUC--CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 986 0.75 0.293852
Target:  5'- -gUGGCGACCU--GCGGGGCgGGGCGg -3'
miRNA:   3'- gaGCUGCUGGAcuUGUUCCGgCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 39864 0.76 0.266014
Target:  5'- gUCGACGAgCU---CAAGGCCGAGCu -3'
miRNA:   3'- gAGCUGCUgGAcuuGUUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 43669 0.76 0.24035
Target:  5'- -gUGGCGACCUGAACGcaagccaagccGGGCCGAauucgcGCGg -3'
miRNA:   3'- gaGCUGCUGGACUUGU-----------UCCGGCU------CGC- -5'
24027 3' -55.2 NC_005262.1 + 23466 0.77 0.216786
Target:  5'- -gCG-CGGCCUGGACGAauGGCUGGGCGa -3'
miRNA:   3'- gaGCuGCUGGACUUGUU--CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 3813 0.8 0.145377
Target:  5'- cCUCGACGGCCcgGAGgAAGguGCCGAGCGc -3'
miRNA:   3'- -GAGCUGCUGGa-CUUgUUC--CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 16491 0.73 0.364616
Target:  5'- --gGACGAgCUGGGCGAGGCgcUGGGCGc -3'
miRNA:   3'- gagCUGCUgGACUUGUUCCG--GCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 21231 0.73 0.389795
Target:  5'- uCUUGuCGACCUGAACGgcacgaAGGCggcgaucCGAGCGg -3'
miRNA:   3'- -GAGCuGCUGGACUUGU------UCCG-------GCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 28712 0.71 0.495886
Target:  5'- aUCGACGAguuCCgccGCGAGGCCGcGCGc -3'
miRNA:   3'- gAGCUGCU---GGacuUGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 31076 0.71 0.495886
Target:  5'- gCUCGcCGACCUGA---AGGgCGAGCc -3'
miRNA:   3'- -GAGCuGCUGGACUuguUCCgGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 30523 0.71 0.485765
Target:  5'- gUCGcCGACCUGGGCGaagcaacgccgaAGGCCGAcacugGCa -3'
miRNA:   3'- gAGCuGCUGGACUUGU------------UCCGGCU-----CGc -5'
24027 3' -55.2 NC_005262.1 + 17393 0.71 0.456017
Target:  5'- aCUCGGCGGCC--GACAAuGCCGAGaCGc -3'
miRNA:   3'- -GAGCUGCUGGacUUGUUcCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 33564 0.72 0.427278
Target:  5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3'
miRNA:   3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 49651 0.72 0.417939
Target:  5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3'
miRNA:   3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 52375 0.72 0.408725
Target:  5'- gCUgGACGcguACCUGAGCAAccuucuGGCCGAGaCGc -3'
miRNA:   3'- -GAgCUGC---UGGACUUGUU------CCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 61556 0.73 0.399639
Target:  5'- uCUCGGCGAUCcgGGACGAGGCgGuGaCGg -3'
miRNA:   3'- -GAGCUGCUGGa-CUUGUUCCGgCuC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.