Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 3' | -55.2 | NC_005262.1 | + | 30261 | 1.1 | 0.001218 |
Target: 5'- gCUCGACGACCUGAACAAGGCCGAGCGg -3' miRNA: 3'- -GAGCUGCUGGACUUGUUCCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 52375 | 0.72 | 0.408725 |
Target: 5'- gCUgGACGcguACCUGAGCAAccuucuGGCCGAGaCGc -3' miRNA: 3'- -GAgCUGC---UGGACUUGUU------CCGGCUC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 49651 | 0.72 | 0.417939 |
Target: 5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3' miRNA: 3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 33564 | 0.72 | 0.427278 |
Target: 5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3' miRNA: 3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 27744 | 0.68 | 0.644588 |
Target: 5'- aUCGACGAgCUGAaggagcguggACAGGcGCCGAcCGu -3' miRNA: 3'- gAGCUGCUgGACU----------UGUUC-CGGCUcGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 2645 | 0.69 | 0.579758 |
Target: 5'- aUCGGCccauGCCUGcGCGGcGCCGGGCGg -3' miRNA: 3'- gAGCUGc---UGGACuUGUUcCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 56911 | 0.69 | 0.579758 |
Target: 5'- gCUCGcCGGCgaGAuCAAGGCCGcGCu -3' miRNA: 3'- -GAGCuGCUGgaCUuGUUCCGGCuCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 54913 | 0.69 | 0.569051 |
Target: 5'- uUCGACGgcucgcACCUG-ACGcuGCCGGGCGu -3' miRNA: 3'- gAGCUGC------UGGACuUGUucCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17760 | 0.69 | 0.569051 |
Target: 5'- --gGACGACacgCUGcucgaauuCGAGGCCGAGCGc -3' miRNA: 3'- gagCUGCUG---GACuu------GUUCCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 13320 | 0.7 | 0.558394 |
Target: 5'- cCUUGACcACCUGAAgAAGGUCG-GCc -3' miRNA: 3'- -GAGCUGcUGGACUUgUUCCGGCuCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 56845 | 0.7 | 0.547794 |
Target: 5'- -aCGACGACCaGAACAAGcuCCG-GCGu -3' miRNA: 3'- gaGCUGCUGGaCUUGUUCc-GGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17393 | 0.71 | 0.456017 |
Target: 5'- aCUCGGCGGCC--GACAAuGCCGAGaCGc -3' miRNA: 3'- -GAGCUGCUGGacUUGUUcCGGCUC-GC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 30523 | 0.71 | 0.485765 |
Target: 5'- gUCGcCGACCUGGGCGaagcaacgccgaAGGCCGAcacugGCa -3' miRNA: 3'- gAGCuGCUGGACUUGU------------UCCGGCU-----CGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 31076 | 0.71 | 0.495886 |
Target: 5'- gCUCGcCGACCUGA---AGGgCGAGCc -3' miRNA: 3'- -GAGCuGCUGGACUuguUCCgGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 28712 | 0.71 | 0.495886 |
Target: 5'- aUCGACGAguuCCgccGCGAGGCCGcGCGc -3' miRNA: 3'- gAGCUGCU---GGacuUGUUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 52711 | 0.7 | 0.526793 |
Target: 5'- -cCGACG-CC-GGACGAGGCCGcGCu -3' miRNA: 3'- gaGCUGCuGGaCUUGUUCCGGCuCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 27690 | 0.78 | 0.175567 |
Target: 5'- gCUCGACGGCCUGuuCGcuGUCGAGCGg -3' miRNA: 3'- -GAGCUGCUGGACuuGUucCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 660 | 0.66 | 0.780635 |
Target: 5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3' miRNA: 3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 54224 | 0.66 | 0.780635 |
Target: 5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3' miRNA: 3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 27640 | 0.66 | 0.770762 |
Target: 5'- -gCGGCGuCCUcgcCGGGGCUGAGCu -3' miRNA: 3'- gaGCUGCuGGAcuuGUUCCGGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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