miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 48891 0.68 0.644588
Target:  5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5'
24027 3' -55.2 NC_005262.1 + 5856 0.68 0.629423
Target:  5'- --aGAUGGCCUGuuuccggauggccGCGAGGCCGuGCu -3'
miRNA:   3'- gagCUGCUGGACu------------UGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 22340 0.69 0.612098
Target:  5'- -gCGACGGCgUGAuGCGcAGGCCGgccGGCGu -3'
miRNA:   3'- gaGCUGCUGgACU-UGU-UCCGGC---UCGC- -5'
24027 3' -55.2 NC_005262.1 + 25748 0.69 0.611016
Target:  5'- aCUCGAUGACCaGAaugcccgacuucgGCAcGGCCGGGaUGg -3'
miRNA:   3'- -GAGCUGCUGGaCU-------------UGUuCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 27446 0.7 0.546737
Target:  5'- -aCGACGGCCUcggucggguucucGGGCAucuugaugAGGUCGAGCa -3'
miRNA:   3'- gaGCUGCUGGA-------------CUUGU--------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 29542 0.7 0.537258
Target:  5'- cCUCGGCGACCUGcGCcucuGCCGcAGCc -3'
miRNA:   3'- -GAGCUGCUGGACuUGuuc-CGGC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 24992 0.7 0.537258
Target:  5'- cCUCGGCGuCCUccgGCu-GGCCGAGCu -3'
miRNA:   3'- -GAGCUGCuGGAcu-UGuuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 29260 0.67 0.698381
Target:  5'- gCUCGGCGacggccGCCUGAcGCAuGGUCGcGCGc -3'
miRNA:   3'- -GAGCUGC------UGGACU-UGUuCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 48692 0.67 0.698381
Target:  5'- cCUCGuCGAgCUGcgauuGC-AGGCCGAGgCGg -3'
miRNA:   3'- -GAGCuGCUgGACu----UGuUCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 27690 0.78 0.175567
Target:  5'- gCUCGACGGCCUGuuCGcuGUCGAGCGg -3'
miRNA:   3'- -GAGCUGCUGGACuuGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 660 0.66 0.780635
Target:  5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3'
miRNA:   3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 54224 0.66 0.780635
Target:  5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3'
miRNA:   3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 27640 0.66 0.770762
Target:  5'- -gCGGCGuCCUcgcCGGGGCUGAGCu -3'
miRNA:   3'- gaGCUGCuGGAcuuGUUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 32791 0.66 0.76075
Target:  5'- gCUCGAUGAugucgcccaCCUGG---AGGCCG-GCGg -3'
miRNA:   3'- -GAGCUGCU---------GGACUuguUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 34421 0.66 0.76075
Target:  5'- gUCGAUGaacGCCUGAuaguGCAGGGC--GGCGa -3'
miRNA:   3'- gAGCUGC---UGGACU----UGUUCCGgcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 51235 0.66 0.750611
Target:  5'- gCUCGGCGACUUcuucACGGcGUCGAGCGc -3'
miRNA:   3'- -GAGCUGCUGGAcu--UGUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 2752 0.67 0.740354
Target:  5'- -aCGGCGGCCaGGACGccGCCcGGCGc -3'
miRNA:   3'- gaGCUGCUGGaCUUGUucCGGcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 49703 0.67 0.729992
Target:  5'- -cCGAgcGCCUGGuuaGCGAcgucgcGGCCGAGCGa -3'
miRNA:   3'- gaGCUgcUGGACU---UGUU------CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 26349 0.67 0.716382
Target:  5'- gUCGuGCGGCagGAACAucgugucccacacgAGGCCGAGCc -3'
miRNA:   3'- gAGC-UGCUGgaCUUGU--------------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 55258 0.67 0.708995
Target:  5'- gCUCGuccGCGACCaUGAuguuCGcGGCCGGGUa -3'
miRNA:   3'- -GAGC---UGCUGG-ACUu---GUuCCGGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.