miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 20845 0.65 0.796117
Target:  5'- uCUCGuggcgcugggguuCGACC-GGGCAGGggucgagcuGCCGAGCGa -3'
miRNA:   3'- -GAGCu------------GCUGGaCUUGUUC---------CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 48891 0.68 0.644588
Target:  5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5'
24027 3' -55.2 NC_005262.1 + 22340 0.69 0.612098
Target:  5'- -gCGACGGCgUGAuGCGcAGGCCGgccGGCGu -3'
miRNA:   3'- gaGCUGCUGgACU-UGU-UCCGGC---UCGC- -5'
24027 3' -55.2 NC_005262.1 + 27690 0.78 0.175567
Target:  5'- gCUCGACGGCCUGuuCGcuGUCGAGCGg -3'
miRNA:   3'- -GAGCUGCUGGACuuGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 32791 0.66 0.76075
Target:  5'- gCUCGAUGAugucgcccaCCUGG---AGGCCG-GCGg -3'
miRNA:   3'- -GAGCUGCU---------GGACUuguUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 34421 0.66 0.76075
Target:  5'- gUCGAUGaacGCCUGAuaguGCAGGGC--GGCGa -3'
miRNA:   3'- gAGCUGC---UGGACU----UGUUCCGgcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 2752 0.67 0.740354
Target:  5'- -aCGGCGGCCaGGACGccGCCcGGCGc -3'
miRNA:   3'- gaGCUGCUGGaCUUGUucCGGcUCGC- -5'
24027 3' -55.2 NC_005262.1 + 49703 0.67 0.729992
Target:  5'- -cCGAgcGCCUGGuuaGCGAcgucgcGGCCGAGCGa -3'
miRNA:   3'- gaGCUgcUGGACU---UGUU------CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 48692 0.67 0.698381
Target:  5'- cCUCGuCGAgCUGcgauuGC-AGGCCGAGgCGg -3'
miRNA:   3'- -GAGCuGCUgGACu----UGuUCCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 46562 0.68 0.666208
Target:  5'- gUCGACGGgCUGcguCGuGGCCGGcGCGg -3'
miRNA:   3'- gAGCUGCUgGACuu-GUuCCGGCU-CGC- -5'
24027 3' -55.2 NC_005262.1 + 55738 0.67 0.687705
Target:  5'- -cCGGCGugCcGGACGcGGCCacGAGCGc -3'
miRNA:   3'- gaGCUGCugGaCUUGUuCCGG--CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 55258 0.67 0.708995
Target:  5'- gCUCGuccGCGACCaUGAuguuCGcGGCCGGGUa -3'
miRNA:   3'- -GAGC---UGCUGG-ACUu---GUuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 660 0.66 0.780635
Target:  5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3'
miRNA:   3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 33652 0.67 0.687705
Target:  5'- uCUCGcCGGCCUcGAGCuc-GUCGAGCa -3'
miRNA:   3'- -GAGCuGCUGGA-CUUGuucCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 54224 0.66 0.780635
Target:  5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3'
miRNA:   3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 26349 0.67 0.716382
Target:  5'- gUCGuGCGGCagGAACAucgugucccacacgAGGCCGAGCc -3'
miRNA:   3'- gAGC-UGCUGgaCUUGU--------------UCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 35066 0.68 0.666208
Target:  5'- -cCGGCuGCCUGGAgcuuCGAcuugcGGCCGAGCGc -3'
miRNA:   3'- gaGCUGcUGGACUU----GUU-----CCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 5856 0.68 0.629423
Target:  5'- --aGAUGGCCUGuuuccggauggccGCGAGGCCGuGCu -3'
miRNA:   3'- gagCUGCUGGACu------------UGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 27640 0.66 0.770762
Target:  5'- -gCGGCGuCCUcgcCGGGGCUGAGCu -3'
miRNA:   3'- gaGCUGCuGGAcuuGUUCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 51235 0.66 0.750611
Target:  5'- gCUCGGCGACUUcuucACGGcGUCGAGCGc -3'
miRNA:   3'- -GAGCUGCUGGAcu--UGUUcCGGCUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.