miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 26906 0.77 0.205763
Target:  5'- gUCG-CGGCCUcGAauuccgauGCAAGGCCGGGCGc -3'
miRNA:   3'- gAGCuGCUGGA-CU--------UGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 48891 0.68 0.644588
Target:  5'- -cCGACGACCgGGAUAcGGCUcguGAGCu -3'
miRNA:   3'- gaGCUGCUGGaCUUGUuCCGG---CUCGc -5'
24027 3' -55.2 NC_005262.1 + 54224 0.66 0.780635
Target:  5'- cCUUGAUGugCUcGAGCGaguAGGCgaGGGCGc -3'
miRNA:   3'- -GAGCUGCugGA-CUUGU---UCCGg-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 24992 0.7 0.537258
Target:  5'- cCUCGGCGuCCUccgGCu-GGCCGAGCu -3'
miRNA:   3'- -GAGCUGCuGGAcu-UGuuCCGGCUCGc -5'
24027 3' -55.2 NC_005262.1 + 27690 0.78 0.175567
Target:  5'- gCUCGACGGCCUGuuCGcuGUCGAGCGg -3'
miRNA:   3'- -GAGCUGCUGGACuuGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 3482 0.73 0.38186
Target:  5'- uCUCGAUGuACCUGGACG-GGCacgGGGCGc -3'
miRNA:   3'- -GAGCUGC-UGGACUUGUuCCGg--CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 660 0.66 0.780635
Target:  5'- -aCGAUGAgCUGaAGCGguuGGgCGAGCGg -3'
miRNA:   3'- gaGCUGCUgGAC-UUGUu--CCgGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 20845 0.65 0.796117
Target:  5'- uCUCGuggcgcugggguuCGACC-GGGCAGGggucgagcuGCCGAGCGa -3'
miRNA:   3'- -GAGCu------------GCUGGaCUUGUUC---------CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 5856 0.68 0.629423
Target:  5'- --aGAUGGCCUGuuuccggauggccGCGAGGCCGuGCu -3'
miRNA:   3'- gagCUGCUGGACu------------UGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 51145 0.74 0.331772
Target:  5'- gCUCGACG-CCgUGAAgAAGucGCCGAGCGc -3'
miRNA:   3'- -GAGCUGCuGG-ACUUgUUC--CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 24533 0.68 0.666208
Target:  5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3'
miRNA:   3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 33564 0.72 0.427278
Target:  5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3'
miRNA:   3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 49651 0.72 0.417939
Target:  5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3'
miRNA:   3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 52375 0.72 0.408725
Target:  5'- gCUgGACGcguACCUGAGCAAccuucuGGCCGAGaCGc -3'
miRNA:   3'- -GAgCUGC---UGGACUUGUU------CCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 54913 0.69 0.569051
Target:  5'- uUCGACGgcucgcACCUG-ACGcuGCCGGGCGu -3'
miRNA:   3'- gAGCUGC------UGGACuUGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 56911 0.69 0.579758
Target:  5'- gCUCGcCGGCgaGAuCAAGGCCGcGCu -3'
miRNA:   3'- -GAGCuGCUGgaCUuGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 2645 0.69 0.579758
Target:  5'- aUCGGCccauGCCUGcGCGGcGCCGGGCGg -3'
miRNA:   3'- gAGCUGc---UGGACuUGUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 27744 0.68 0.644588
Target:  5'- aUCGACGAgCUGAaggagcguggACAGGcGCCGAcCGu -3'
miRNA:   3'- gAGCUGCUgGACU----------UGUUC-CGGCUcGC- -5'
24027 3' -55.2 NC_005262.1 + 29128 0.68 0.666208
Target:  5'- -aCGAaGGCC-GAcuucaucaucgACGAGGCCGAGUGg -3'
miRNA:   3'- gaGCUgCUGGaCU-----------UGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 40423 0.68 0.666208
Target:  5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3'
miRNA:   3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.