miRNA display CGI


Results 41 - 60 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 3' -55.2 NC_005262.1 + 43953 0.66 0.770762
Target:  5'- -gCGACGACgUGAGCAugaucuacgAGGCUcuGCGc -3'
miRNA:   3'- gaGCUGCUGgACUUGU---------UCCGGcuCGC- -5'
24027 3' -55.2 NC_005262.1 + 35803 0.66 0.769767
Target:  5'- gCUCGAuauCGACgC-GAACAgcaucauGGGCCgGAGCGg -3'
miRNA:   3'- -GAGCU---GCUG-GaCUUGU-------UCCGG-CUCGC- -5'
24027 3' -55.2 NC_005262.1 + 24462 0.66 0.750611
Target:  5'- aUCGAUGGCgCU--GCAcGGCaCGAGCGu -3'
miRNA:   3'- gAGCUGCUG-GAcuUGUuCCG-GCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 54913 0.69 0.569051
Target:  5'- uUCGACGgcucgcACCUG-ACGcuGCCGGGCGu -3'
miRNA:   3'- gAGCUGC------UGGACuUGUucCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 986 0.75 0.293852
Target:  5'- -gUGGCGACCU--GCGGGGCgGGGCGg -3'
miRNA:   3'- gaGCUGCUGGAcuUGUUCCGgCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 51145 0.74 0.331772
Target:  5'- gCUCGACG-CCgUGAAgAAGucGCCGAGCGc -3'
miRNA:   3'- -GAGCUGCuGG-ACUUgUUC--CGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 21231 0.73 0.389795
Target:  5'- uCUUGuCGACCUGAACGgcacgaAGGCggcgaucCGAGCGg -3'
miRNA:   3'- -GAGCuGCUGGACUUGU------UCCG-------GCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 61556 0.73 0.399639
Target:  5'- uCUCGGCGAUCcgGGACGAGGCgGuGaCGg -3'
miRNA:   3'- -GAGCUGCUGGa-CUUGUUCCGgCuC-GC- -5'
24027 3' -55.2 NC_005262.1 + 52375 0.72 0.408725
Target:  5'- gCUgGACGcguACCUGAGCAAccuucuGGCCGAGaCGc -3'
miRNA:   3'- -GAgCUGC---UGGACUUGUU------CCGGCUC-GC- -5'
24027 3' -55.2 NC_005262.1 + 49651 0.72 0.417939
Target:  5'- aUCGGCGGCCU--GCAAGGCgGcGGCa -3'
miRNA:   3'- gAGCUGCUGGAcuUGUUCCGgC-UCGc -5'
24027 3' -55.2 NC_005262.1 + 33564 0.72 0.427278
Target:  5'- gCUCGACGAgCU---CGAGGCCG-GCGa -3'
miRNA:   3'- -GAGCUGCUgGAcuuGUUCCGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 13320 0.7 0.558394
Target:  5'- cCUUGACcACCUGAAgAAGGUCG-GCc -3'
miRNA:   3'- -GAGCUGcUGGACUUgUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 17760 0.69 0.569051
Target:  5'- --gGACGACacgCUGcucgaauuCGAGGCCGAGCGc -3'
miRNA:   3'- gagCUGCUG---GACuu------GUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 56911 0.69 0.579758
Target:  5'- gCUCGcCGGCgaGAuCAAGGCCGcGCu -3'
miRNA:   3'- -GAGCuGCUGgaCUuGUUCCGGCuCGc -5'
24027 3' -55.2 NC_005262.1 + 2645 0.69 0.579758
Target:  5'- aUCGGCccauGCCUGcGCGGcGCCGGGCGg -3'
miRNA:   3'- gAGCUGc---UGGACuUGUUcCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 27744 0.68 0.644588
Target:  5'- aUCGACGAgCUGAaggagcguggACAGGcGCCGAcCGu -3'
miRNA:   3'- gAGCUGCUgGACU----------UGUUC-CGGCUcGC- -5'
24027 3' -55.2 NC_005262.1 + 29128 0.68 0.666208
Target:  5'- -aCGAaGGCC-GAcuucaucaucgACGAGGCCGAGUGg -3'
miRNA:   3'- gaGCUgCUGGaCU-----------UGUUCCGGCUCGC- -5'
24027 3' -55.2 NC_005262.1 + 40423 0.68 0.666208
Target:  5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3'
miRNA:   3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5'
24027 3' -55.2 NC_005262.1 + 24533 0.68 0.666208
Target:  5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3'
miRNA:   3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5'
24027 3' -55.2 NC_005262.1 + 17158 0.68 0.676977
Target:  5'- aUCGAgaaGGCCg--GCAAGGCCGcGCGc -3'
miRNA:   3'- gAGCUg--CUGGacuUGUUCCGGCuCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.