Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 3' | -55.2 | NC_005262.1 | + | 39864 | 0.76 | 0.266014 |
Target: 5'- gUCGACGAgCU---CAAGGCCGAGCu -3' miRNA: 3'- gAGCUGCUgGAcuuGUUCCGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 54913 | 0.69 | 0.569051 |
Target: 5'- uUCGACGgcucgcACCUG-ACGcuGCCGGGCGu -3' miRNA: 3'- gAGCUGC------UGGACuUGUucCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 56911 | 0.69 | 0.579758 |
Target: 5'- gCUCGcCGGCgaGAuCAAGGCCGcGCu -3' miRNA: 3'- -GAGCuGCUGgaCUuGUUCCGGCuCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 56789 | 0.66 | 0.750611 |
Target: 5'- gCUgGcCGGCCUGAAggcCGAcGUCGAGCGg -3' miRNA: 3'- -GAgCuGCUGGACUU---GUUcCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 3775 | 0.67 | 0.740354 |
Target: 5'- uUCGACGAUgaGAACGGaGCCGGuCGg -3' miRNA: 3'- gAGCUGCUGgaCUUGUUcCGGCUcGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 50131 | 0.67 | 0.740354 |
Target: 5'- gCUCGcUGACCgagugGAGCGAGcCUGAGCu -3' miRNA: 3'- -GAGCuGCUGGa----CUUGUUCcGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 30865 | 0.67 | 0.729992 |
Target: 5'- -aUGACGGCCgagGAGuc--GCCGAGCGg -3' miRNA: 3'- gaGCUGCUGGa--CUUguucCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 40322 | 0.67 | 0.729992 |
Target: 5'- -cCGGCGACCgcuucGAGCAucggcucacGGCCGGcGCGc -3' miRNA: 3'- gaGCUGCUGGa----CUUGUu--------CCGGCU-CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 16085 | 0.67 | 0.719536 |
Target: 5'- -aUGACGaACCUGAAC--GGCgCGGGCc -3' miRNA: 3'- gaGCUGC-UGGACUUGuuCCG-GCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 49684 | 0.67 | 0.719536 |
Target: 5'- gUCGGCGgcgcgcgcaACCUGAaccGCGAcggcGuGCCGGGCGg -3' miRNA: 3'- gAGCUGC---------UGGACU---UGUU----C-CGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 50890 | 0.67 | 0.698381 |
Target: 5'- -aCGGCGcgccgucaaucACCUGAacgcGCAGGGCauCGAGCa -3' miRNA: 3'- gaGCUGC-----------UGGACU----UGUUCCG--GCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 51819 | 0.67 | 0.687705 |
Target: 5'- -gCGACGACUUcAGCGcGGCCGAcguGCGc -3' miRNA: 3'- gaGCUGCUGGAcUUGUuCCGGCU---CGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 35233 | 0.67 | 0.687705 |
Target: 5'- gUCGGCGGCgCgaucGGCAGcGGCUGGGCGc -3' miRNA: 3'- gAGCUGCUG-Gac--UUGUU-CCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17707 | 0.68 | 0.676977 |
Target: 5'- gUCGcUGGCCcGAACGAGcCCGAGCc -3' miRNA: 3'- gAGCuGCUGGaCUUGUUCcGGCUCGc -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 17158 | 0.68 | 0.676977 |
Target: 5'- aUCGAgaaGGCCg--GCAAGGCCGcGCGc -3' miRNA: 3'- gAGCUg--CUGGacuUGUUCCGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 24533 | 0.68 | 0.666208 |
Target: 5'- cCUUGACGACCUucGCGAucGCCG-GCGu -3' miRNA: 3'- -GAGCUGCUGGAcuUGUUc-CGGCuCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 40423 | 0.68 | 0.666208 |
Target: 5'- gUCGGCGACCUGAAaaucuGGaCGGGgGc -3' miRNA: 3'- gAGCUGCUGGACUUguu--CCgGCUCgC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 29128 | 0.68 | 0.666208 |
Target: 5'- -aCGAaGGCC-GAcuucaucaucgACGAGGCCGAGUGg -3' miRNA: 3'- gaGCUgCUGGaCU-----------UGUUCCGGCUCGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 27744 | 0.68 | 0.644588 |
Target: 5'- aUCGACGAgCUGAaggagcguggACAGGcGCCGAcCGu -3' miRNA: 3'- gAGCUGCUgGACU----------UGUUC-CGGCUcGC- -5' |
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24027 | 3' | -55.2 | NC_005262.1 | + | 2645 | 0.69 | 0.579758 |
Target: 5'- aUCGGCccauGCCUGcGCGGcGCCGGGCGg -3' miRNA: 3'- gAGCUGc---UGGACuUGUUcCGGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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