miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 61075 0.66 0.622683
Target:  5'- -aCGCcGUCGACgAAGGCgCAGcCCGa -3'
miRNA:   3'- gcGCGaCAGCUG-UUCCGgGUCuGGCg -5'
24027 5' -58.4 NC_005262.1 + 6820 0.66 0.622683
Target:  5'- gCGCGCgagaUGuUCGACAagcacGGGCCCGGcAUCa- -3'
miRNA:   3'- -GCGCG----AC-AGCUGU-----UCCGGGUC-UGGcg -5'
24027 5' -58.4 NC_005262.1 + 42968 0.66 0.622683
Target:  5'- aCGCGCaa-CGACu-GGCugaaaaccgcgCCGGGCCGCu -3'
miRNA:   3'- -GCGCGacaGCUGuuCCG-----------GGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 53032 0.66 0.622683
Target:  5'- -uUGCcGcCGGCGAaGCCCAGGCgGCg -3'
miRNA:   3'- gcGCGaCaGCUGUUcCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 52542 0.66 0.622683
Target:  5'- uCGCGCUGgcgcaggCGAuggaaacgauCGAGGCCCuGucaGCCGa -3'
miRNA:   3'- -GCGCGACa------GCU----------GUUCCGGGuC---UGGCg -5'
24027 5' -58.4 NC_005262.1 + 53357 0.66 0.622683
Target:  5'- cCGCGCgaaccUGaUCGGCGccaugcgccuGCCgCAGACCGCg -3'
miRNA:   3'- -GCGCG-----AC-AGCUGUuc--------CGG-GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 50402 0.66 0.612068
Target:  5'- cCGCGCgg-CGAUcAGcGCCgCGGAgCGCg -3'
miRNA:   3'- -GCGCGacaGCUGuUC-CGG-GUCUgGCG- -5'
24027 5' -58.4 NC_005262.1 + 48614 0.66 0.612068
Target:  5'- uCGCaGC--UCGACGAGgaggaGCCCGG-CCGCu -3'
miRNA:   3'- -GCG-CGacAGCUGUUC-----CGGGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 13000 0.66 0.612068
Target:  5'- cCGCGCagguUGUCGugucCAgcAGGCCgGGGCUGa -3'
miRNA:   3'- -GCGCG----ACAGCu---GU--UCCGGgUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 33439 0.66 0.612068
Target:  5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3'
miRNA:   3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 60578 0.66 0.60147
Target:  5'- cCGCGCggccCGGCGucucGCCCuGAUCGCg -3'
miRNA:   3'- -GCGCGaca-GCUGUuc--CGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 56975 0.66 0.60147
Target:  5'- gGCGUgGUCGGCAAGaccGCCUAcGACaagCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUC---CGGGU-CUG---GCG- -5'
24027 5' -58.4 NC_005262.1 + 45146 0.66 0.60147
Target:  5'- aCGUGCg--CGACAAGGCgCucgcGCUGCg -3'
miRNA:   3'- -GCGCGacaGCUGUUCCGgGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 3508 0.66 0.590896
Target:  5'- gCGCGCUGaagCGAUgcGGCUC--GCCGUc -3'
miRNA:   3'- -GCGCGACa--GCUGuuCCGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 47338 0.66 0.590896
Target:  5'- gGCGCUcgaGACGcAGcGCCagaaAGGCCGCa -3'
miRNA:   3'- gCGCGAcagCUGU-UC-CGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 43820 0.66 0.590896
Target:  5'- uCGCGg---CGACAcGGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgacaGCUGUuCCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 51932 0.66 0.58984
Target:  5'- --aGCUGUUcacgacgGACAAGGUggAGGCCGCu -3'
miRNA:   3'- gcgCGACAG-------CUGUUCCGggUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 57796 0.66 0.586675
Target:  5'- gCGCGC-GUCGugGcGGCCUAccgaaagcaccuuGCCGCg -3'
miRNA:   3'- -GCGCGaCAGCugUuCCGGGUc------------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 38546 0.66 0.580354
Target:  5'- uCGCGgUGacgaUCGGCAccGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgAC----AGCUGUucCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 43714 0.66 0.580354
Target:  5'- aCGCGCUcacCGACAagaAGGUCgAaACCGCg -3'
miRNA:   3'- -GCGCGAca-GCUGU---UCCGGgUcUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.