miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 47338 0.66 0.590896
Target:  5'- gGCGCUcgaGACGcAGcGCCagaaAGGCCGCa -3'
miRNA:   3'- gCGCGAcagCUGU-UC-CGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 43820 0.66 0.590896
Target:  5'- uCGCGg---CGACAcGGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgacaGCUGUuCCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 49838 0.66 0.580354
Target:  5'- aGCGCg--CGAau-GGCCCGGuGCCGg -3'
miRNA:   3'- gCGCGacaGCUguuCCGGGUC-UGGCg -5'
24027 5' -58.4 NC_005262.1 + 38546 0.66 0.580354
Target:  5'- uCGCGgUGacgaUCGGCAccGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgAC----AGCUGUucCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 51932 0.66 0.58984
Target:  5'- --aGCUGUUcacgacgGACAAGGUggAGGCCGCu -3'
miRNA:   3'- gcgCGACAG-------CUGUUCCGggUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 45146 0.66 0.60147
Target:  5'- aCGUGCg--CGACAAGGCgCucgcGCUGCg -3'
miRNA:   3'- -GCGCGacaGCUGUUCCGgGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 56975 0.66 0.60147
Target:  5'- gGCGUgGUCGGCAAGaccGCCUAcGACaagCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUC---CGGGU-CUG---GCG- -5'
24027 5' -58.4 NC_005262.1 + 48614 0.66 0.612068
Target:  5'- uCGCaGC--UCGACGAGgaggaGCCCGG-CCGCu -3'
miRNA:   3'- -GCG-CGacAGCUGUUC-----CGGGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 29463 0.67 0.535569
Target:  5'- gGCGCagGUCGcCGAGGCgaaggcgaagcacaUCAG-CCGCa -3'
miRNA:   3'- gCGCGa-CAGCuGUUCCG--------------GGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 27532 0.67 0.537628
Target:  5'- cCGCGCgcacCGACGAGGgcgagcucagcCCCGGcgaggacGCCGCg -3'
miRNA:   3'- -GCGCGaca-GCUGUUCC-----------GGGUC-------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 34651 0.67 0.548998
Target:  5'- gGCGUcGcUCGACu-GGCUCGacGACCGCu -3'
miRNA:   3'- gCGCGaC-AGCUGuuCCGGGU--CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 6466 0.67 0.559398
Target:  5'- aGaCGCcgGcaUCGACGcGGGCCCAGAaguUCGCa -3'
miRNA:   3'- gC-GCGa-C--AGCUGU-UCCGGGUCU---GGCG- -5'
24027 5' -58.4 NC_005262.1 + 58699 0.67 0.559398
Target:  5'- gCGCaacaaGCUGgCGGCAugcccgAGGCgCuGACCGCg -3'
miRNA:   3'- -GCG-----CGACaGCUGU------UCCGgGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 34288 0.67 0.532487
Target:  5'- gCGCGCUGUCGaaggacagcgaguucGCGAacGGCaCGGucGCCGCc -3'
miRNA:   3'- -GCGCGACAGC---------------UGUU--CCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 40355 0.67 0.527364
Target:  5'- gCGCGCUgaugucgaucGUCGGCGAcgucgacGGCCUgucuGCCGCg -3'
miRNA:   3'- -GCGCGA----------CAGCUGUU-------CCGGGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49235 0.67 0.518188
Target:  5'- gCGCGCaGUCcgcgcGCGAGGUCCGcGACCa- -3'
miRNA:   3'- -GCGCGaCAGc----UGUUCCGGGU-CUGGcg -5'
24027 5' -58.4 NC_005262.1 + 622 0.67 0.518188
Target:  5'- aGCGgUGcUCGGCuuGGCUCAG-CUGCu -3'
miRNA:   3'- gCGCgAC-AGCUGuuCCGGGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 12174 0.67 0.508069
Target:  5'- cCGCGCUGUcugcgCGGCAGGagcaaaucGCgCAGAUgGCg -3'
miRNA:   3'- -GCGCGACA-----GCUGUUC--------CGgGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 25411 0.67 0.508069
Target:  5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3'
miRNA:   3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 1040 0.67 0.559398
Target:  5'- gGCGU--UCGACAAuaggcgcgaucGGCCCGGAgCCGa -3'
miRNA:   3'- gCGCGacAGCUGUU-----------CCGGGUCU-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.