Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 5' | -58.4 | NC_005262.1 | + | 12347 | 0.72 | 0.298642 |
Target: 5'- cCGCGa--UCGACAGGuGCCCGaccaucgacgcGACCGCa -3' miRNA: 3'- -GCGCgacAGCUGUUC-CGGGU-----------CUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 376 | 0.72 | 0.264381 |
Target: 5'- aCGC-CUGUCG-CAAGGagCCGGAgCCGCg -3' miRNA: 3'- -GCGcGACAGCuGUUCCg-GGUCU-GGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 49140 | 0.72 | 0.264381 |
Target: 5'- gGCGaagGUCGGCAcgguGGGCgugCAGGCCGCa -3' miRNA: 3'- gCGCga-CAGCUGU----UCCGg--GUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 5050 | 0.72 | 0.264381 |
Target: 5'- gGCGcCUGaUCGGCGggcAGGCCCGcGGCgGCg -3' miRNA: 3'- gCGC-GAC-AGCUGU---UCCGGGU-CUGgCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 60477 | 0.72 | 0.264381 |
Target: 5'- uGaCGCUGcgCGAuCAGGGCgagacgCCGGGCCGCg -3' miRNA: 3'- gC-GCGACa-GCU-GUUCCG------GGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 51369 | 0.72 | 0.270969 |
Target: 5'- cCGCGCcGUCcGCGAcgccGGCCaAGGCCGCg -3' miRNA: 3'- -GCGCGaCAGcUGUU----CCGGgUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 3342 | 0.72 | 0.277688 |
Target: 5'- uGuCGCUGaUGACGAGGCCgCGGcucgcuagauGCCGCa -3' miRNA: 3'- gC-GCGACaGCUGUUCCGG-GUC----------UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 32384 | 0.72 | 0.264381 |
Target: 5'- aCGCGCUGccUCGACGuucGcGCCCGcGCCGUa -3' miRNA: 3'- -GCGCGAC--AGCUGUu--C-CGGGUcUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 17084 | 0.73 | 0.251596 |
Target: 5'- gCGCGCccGUCGACGcGGC--GGGCCGCg -3' miRNA: 3'- -GCGCGa-CAGCUGUuCCGggUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 59225 | 0.73 | 0.251596 |
Target: 5'- gCGCGCgg-CGACGcGGCCCGG-CCGg -3' miRNA: 3'- -GCGCGacaGCUGUuCCGGGUCuGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 53427 | 0.73 | 0.251596 |
Target: 5'- uCGCGCgGUCGGCGAGGUagcGGCgCGCg -3' miRNA: 3'- -GCGCGaCAGCUGUUCCGgguCUG-GCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 50668 | 0.73 | 0.239324 |
Target: 5'- cCGgGUUGagCGGCAgcGGGCUCGGGCUGCg -3' miRNA: 3'- -GCgCGACa-GCUGU--UCCGGGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 17146 | 0.74 | 0.210827 |
Target: 5'- gCGCGCgucgcaaUCGAgAAGGCCggcaAGGCCGCg -3' miRNA: 3'- -GCGCGac-----AGCUgUUCCGGg---UCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 10970 | 0.74 | 0.221859 |
Target: 5'- uCGCGCUGUCGGCGc-GCCgGGAaCGCc -3' miRNA: 3'- -GCGCGACAGCUGUucCGGgUCUgGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 51126 | 0.76 | 0.158302 |
Target: 5'- aCGCGCcgGUCGACAAGGCgCucgacGCCGUg -3' miRNA: 3'- -GCGCGa-CAGCUGUUCCGgGuc---UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 61360 | 0.77 | 0.138572 |
Target: 5'- cCGCGCcgaucgagucUGUC-ACGAacuGGCCCAGGCCGCc -3' miRNA: 3'- -GCGCG----------ACAGcUGUU---CCGGGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 44433 | 0.78 | 0.121122 |
Target: 5'- aGCGC-GUCGACGuucuuugcGGGCaCCAGACCGg -3' miRNA: 3'- gCGCGaCAGCUGU--------UCCG-GGUCUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 41651 | 0.8 | 0.078118 |
Target: 5'- aCGUGUUGUgGGCGuGGCCCGGAUCGUa -3' miRNA: 3'- -GCGCGACAgCUGUuCCGGGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 30297 | 1.12 | 0.0004 |
Target: 5'- gCGCGCUGUCGACAAGGCCCAGACCGCg -3' miRNA: 3'- -GCGCGACAGCUGUUCCGGGUCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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