Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 5' | -58.4 | NC_005262.1 | + | 1040 | 0.67 | 0.559398 |
Target: 5'- gGCGU--UCGACAAuaggcgcgaucGGCCCGGAgCCGa -3' miRNA: 3'- gCGCGacAGCUGUU-----------CCGGGUCU-GGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 12174 | 0.67 | 0.508069 |
Target: 5'- cCGCGCUGUcugcgCGGCAGGagcaaaucGCgCAGAUgGCg -3' miRNA: 3'- -GCGCGACA-----GCUGUUC--------CGgGUCUGgCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 34651 | 0.67 | 0.548998 |
Target: 5'- gGCGUcGcUCGACu-GGCUCGacGACCGCu -3' miRNA: 3'- gCGCGaC-AGCUGuuCCGGGU--CUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 27532 | 0.67 | 0.537628 |
Target: 5'- cCGCGCgcacCGACGAGGgcgagcucagcCCCGGcgaggacGCCGCg -3' miRNA: 3'- -GCGCGaca-GCUGUUCC-----------GGGUC-------UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 29463 | 0.67 | 0.535569 |
Target: 5'- gGCGCagGUCGcCGAGGCgaaggcgaagcacaUCAG-CCGCa -3' miRNA: 3'- gCGCGa-CAGCuGUUCCG--------------GGUCuGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 34288 | 0.67 | 0.532487 |
Target: 5'- gCGCGCUGUCGaaggacagcgaguucGCGAacGGCaCGGucGCCGCc -3' miRNA: 3'- -GCGCGACAGC---------------UGUU--CCGgGUC--UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 40355 | 0.67 | 0.527364 |
Target: 5'- gCGCGCUgaugucgaucGUCGGCGAcgucgacGGCCUgucuGCCGCg -3' miRNA: 3'- -GCGCGA----------CAGCUGUU-------CCGGGuc--UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 49235 | 0.67 | 0.518188 |
Target: 5'- gCGCGCaGUCcgcgcGCGAGGUCCGcGACCa- -3' miRNA: 3'- -GCGCGaCAGc----UGUUCCGGGU-CUGGcg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 622 | 0.67 | 0.518188 |
Target: 5'- aGCGgUGcUCGGCuuGGCUCAG-CUGCu -3' miRNA: 3'- gCGCgAC-AGCUGuuCCGGGUCuGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 25411 | 0.67 | 0.508069 |
Target: 5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3' miRNA: 3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 6466 | 0.67 | 0.559398 |
Target: 5'- aGaCGCcgGcaUCGACGcGGGCCCAGAaguUCGCa -3' miRNA: 3'- gC-GCGa-C--AGCUGU-UCCGGGUCU---GGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 6820 | 0.66 | 0.622683 |
Target: 5'- gCGCGCgagaUGuUCGACAagcacGGGCCCGGcAUCa- -3' miRNA: 3'- -GCGCG----AC-AGCUGU-----UCCGGGUC-UGGcg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 61075 | 0.66 | 0.622683 |
Target: 5'- -aCGCcGUCGACgAAGGCgCAGcCCGa -3' miRNA: 3'- gcGCGaCAGCUG-UUCCGgGUCuGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 13000 | 0.66 | 0.612068 |
Target: 5'- cCGCGCagguUGUCGugucCAgcAGGCCgGGGCUGa -3' miRNA: 3'- -GCGCG----ACAGCu---GU--UCCGGgUCUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 33439 | 0.66 | 0.612068 |
Target: 5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3' miRNA: 3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 53357 | 0.66 | 0.622683 |
Target: 5'- cCGCGCgaaccUGaUCGGCGccaugcgccuGCCgCAGACCGCg -3' miRNA: 3'- -GCGCG-----AC-AGCUGUuc--------CGG-GUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 52542 | 0.66 | 0.622683 |
Target: 5'- uCGCGCUGgcgcaggCGAuggaaacgauCGAGGCCCuGucaGCCGa -3' miRNA: 3'- -GCGCGACa------GCU----------GUUCCGGGuC---UGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 42968 | 0.66 | 0.622683 |
Target: 5'- aCGCGCaa-CGACu-GGCugaaaaccgcgCCGGGCCGCu -3' miRNA: 3'- -GCGCGacaGCUGuuCCG-----------GGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 50402 | 0.66 | 0.612068 |
Target: 5'- cCGCGCgg-CGAUcAGcGCCgCGGAgCGCg -3' miRNA: 3'- -GCGCGacaGCUGuUC-CGG-GUCUgGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 48614 | 0.66 | 0.612068 |
Target: 5'- uCGCaGC--UCGACGAGgaggaGCCCGG-CCGCu -3' miRNA: 3'- -GCG-CGacAGCUGUUC-----CGGGUCuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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