miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 30297 1.12 0.0004
Target:  5'- gCGCGCUGUCGACAAGGCCCAGACCGCg -3'
miRNA:   3'- -GCGCGACAGCUGUUCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 41651 0.8 0.078118
Target:  5'- aCGUGUUGUgGGCGuGGCCCGGAUCGUa -3'
miRNA:   3'- -GCGCGACAgCUGUuCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 44433 0.78 0.121122
Target:  5'- aGCGC-GUCGACGuucuuugcGGGCaCCAGACCGg -3'
miRNA:   3'- gCGCGaCAGCUGU--------UCCG-GGUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 61360 0.77 0.138572
Target:  5'- cCGCGCcgaucgagucUGUC-ACGAacuGGCCCAGGCCGCc -3'
miRNA:   3'- -GCGCG----------ACAGcUGUU---CCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 51126 0.76 0.158302
Target:  5'- aCGCGCcgGUCGACAAGGCgCucgacGCCGUg -3'
miRNA:   3'- -GCGCGa-CAGCUGUUCCGgGuc---UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 17146 0.74 0.210827
Target:  5'- gCGCGCgucgcaaUCGAgAAGGCCggcaAGGCCGCg -3'
miRNA:   3'- -GCGCGac-----AGCUgUUCCGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 10970 0.74 0.221859
Target:  5'- uCGCGCUGUCGGCGc-GCCgGGAaCGCc -3'
miRNA:   3'- -GCGCGACAGCUGUucCGGgUCUgGCG- -5'
24027 5' -58.4 NC_005262.1 + 50668 0.73 0.239324
Target:  5'- cCGgGUUGagCGGCAgcGGGCUCGGGCUGCg -3'
miRNA:   3'- -GCgCGACa-GCUGU--UCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 59225 0.73 0.251596
Target:  5'- gCGCGCgg-CGACGcGGCCCGG-CCGg -3'
miRNA:   3'- -GCGCGacaGCUGUuCCGGGUCuGGCg -5'
24027 5' -58.4 NC_005262.1 + 17084 0.73 0.251596
Target:  5'- gCGCGCccGUCGACGcGGC--GGGCCGCg -3'
miRNA:   3'- -GCGCGa-CAGCUGUuCCGggUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 53427 0.73 0.251596
Target:  5'- uCGCGCgGUCGGCGAGGUagcGGCgCGCg -3'
miRNA:   3'- -GCGCGaCAGCUGUUCCGgguCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 32384 0.72 0.264381
Target:  5'- aCGCGCUGccUCGACGuucGcGCCCGcGCCGUa -3'
miRNA:   3'- -GCGCGAC--AGCUGUu--C-CGGGUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 376 0.72 0.264381
Target:  5'- aCGC-CUGUCG-CAAGGagCCGGAgCCGCg -3'
miRNA:   3'- -GCGcGACAGCuGUUCCg-GGUCU-GGCG- -5'
24027 5' -58.4 NC_005262.1 + 60477 0.72 0.264381
Target:  5'- uGaCGCUGcgCGAuCAGGGCgagacgCCGGGCCGCg -3'
miRNA:   3'- gC-GCGACa-GCU-GUUCCG------GGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 5050 0.72 0.264381
Target:  5'- gGCGcCUGaUCGGCGggcAGGCCCGcGGCgGCg -3'
miRNA:   3'- gCGC-GAC-AGCUGU---UCCGGGU-CUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 49140 0.72 0.264381
Target:  5'- gGCGaagGUCGGCAcgguGGGCgugCAGGCCGCa -3'
miRNA:   3'- gCGCga-CAGCUGU----UCCGg--GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 51369 0.72 0.270969
Target:  5'- cCGCGCcGUCcGCGAcgccGGCCaAGGCCGCg -3'
miRNA:   3'- -GCGCGaCAGcUGUU----CCGGgUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 3342 0.72 0.277688
Target:  5'- uGuCGCUGaUGACGAGGCCgCGGcucgcuagauGCCGCa -3'
miRNA:   3'- gC-GCGACaGCUGUUCCGG-GUC----------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 46914 0.72 0.291524
Target:  5'- gCGCGCUuuucUCGGCGAGcGCgCGGGCCuGCa -3'
miRNA:   3'- -GCGCGAc---AGCUGUUC-CGgGUCUGG-CG- -5'
24027 5' -58.4 NC_005262.1 + 12347 0.72 0.298642
Target:  5'- cCGCGa--UCGACAGGuGCCCGaccaucgacgcGACCGCa -3'
miRNA:   3'- -GCGCgacAGCUGUUC-CGGGU-----------CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.