miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 59653 0.71 0.305894
Target:  5'- uCGCGCUGgucgcCGACAA--CCCGGAUCGUg -3'
miRNA:   3'- -GCGCGACa----GCUGUUccGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 43917 0.71 0.31328
Target:  5'- cCGCGCg--CGGCc-GGCCCGcGGCCGUg -3'
miRNA:   3'- -GCGCGacaGCUGuuCCGGGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 765 0.71 0.31328
Target:  5'- aCGCGCUcGUCGcCGAGGUUCGGGCgugGCu -3'
miRNA:   3'- -GCGCGA-CAGCuGUUCCGGGUCUGg--CG- -5'
24027 5' -58.4 NC_005262.1 + 22215 0.71 0.3208
Target:  5'- uCGCGC--UCGACAA-GCUCAcGGCCGCg -3'
miRNA:   3'- -GCGCGacAGCUGUUcCGGGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 11246 0.71 0.328455
Target:  5'- gGCGUUGUCG-CAGGGCCgCccgugcGACCGg -3'
miRNA:   3'- gCGCGACAGCuGUUCCGG-Gu-----CUGGCg -5'
24027 5' -58.4 NC_005262.1 + 33680 0.71 0.328455
Target:  5'- cCGCGUacacgGccaaauUCGGCAAGGUCCcGGCCGCc -3'
miRNA:   3'- -GCGCGa----C------AGCUGUUCCGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 42267 0.71 0.340981
Target:  5'- gCGCGCcGUCgcccaucacguacaGACGaucggccgcgaccGGGCCCGGcGCCGCg -3'
miRNA:   3'- -GCGCGaCAG--------------CUGU-------------UCCGGGUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54590 0.71 0.343368
Target:  5'- cCGUGaUGUCGGucGGGCCCAGcggcuucggcugcACCGCg -3'
miRNA:   3'- -GCGCgACAGCUguUCCGGGUC-------------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 14551 0.7 0.352222
Target:  5'- uGCGCUGgaUCGGCAGGcGUCUc-GCCGCg -3'
miRNA:   3'- gCGCGAC--AGCUGUUC-CGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49618 0.7 0.352222
Target:  5'- gCGCGCUcugCGGCAgcuccucgagcAGGCCCucggcGAUCGCg -3'
miRNA:   3'- -GCGCGAca-GCUGU-----------UCCGGGu----CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 2032 0.7 0.35794
Target:  5'- uCGUGCUGcUCGACGGGGCgcguagcgagcaucCCAG-CCaGCg -3'
miRNA:   3'- -GCGCGAC-AGCUGUUCCG--------------GGUCuGG-CG- -5'
24027 5' -58.4 NC_005262.1 + 44599 0.7 0.36041
Target:  5'- aGCGCgg-CGAuCAGgcuGGCCCAGAUgGCg -3'
miRNA:   3'- gCGCGacaGCU-GUU---CCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 53715 0.7 0.377182
Target:  5'- cCGCGUccaUGUCGACGcccGGCUCGggaacGACCGUg -3'
miRNA:   3'- -GCGCG---ACAGCUGUu--CCGGGU-----CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24927 0.7 0.385763
Target:  5'- gGCGCagggUGaUCGGCAcGGCgCCGG-CCGCg -3'
miRNA:   3'- gCGCG----AC-AGCUGUuCCG-GGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 46401 0.7 0.394472
Target:  5'- gCGCGCcucGUCgGGCuGGGCCCgcaAGGuCCGCa -3'
miRNA:   3'- -GCGCGa--CAG-CUGuUCCGGG---UCU-GGCG- -5'
24027 5' -58.4 NC_005262.1 + 49931 0.7 0.394472
Target:  5'- cCGC-CUGaCGACc-GGCCCGGAUgGCg -3'
miRNA:   3'- -GCGcGACaGCUGuuCCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 57683 0.69 0.402417
Target:  5'- uCGCGCgccgGgcgCGGCAAGGUgCuuucgguAGGCCGCc -3'
miRNA:   3'- -GCGCGa---Ca--GCUGUUCCGgG-------UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 11024 0.69 0.421347
Target:  5'- gGCgGCUGUCGcGCAAGaCCgcgcgcagcaaCAGGCCGCa -3'
miRNA:   3'- gCG-CGACAGC-UGUUCcGG-----------GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58900 0.69 0.430547
Target:  5'- cCGCGCUGcgCGAuCAGgccggcGGCCC-GACCGa -3'
miRNA:   3'- -GCGCGACa-GCU-GUU------CCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 43664 0.69 0.43426
Target:  5'- uCGCGCUGaccUCGACcucccacgucugcgcGAGGaauCCGGACgGCa -3'
miRNA:   3'- -GCGCGAC---AGCUG---------------UUCCg--GGUCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.