Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 5' | -58.4 | NC_005262.1 | + | 42376 | 0.66 | 0.580354 |
Target: 5'- aCGCGCgagaacacGUCGcCGGuGCCCGuGCCGCu -3' miRNA: 3'- -GCGCGa-------CAGCuGUUcCGGGUcUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 57796 | 0.66 | 0.586675 |
Target: 5'- gCGCGC-GUCGugGcGGCCUAccgaaagcaccuuGCCGCg -3' miRNA: 3'- -GCGCGaCAGCugUuCCGGGUc------------UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 51932 | 0.66 | 0.58984 |
Target: 5'- --aGCUGUUcacgacgGACAAGGUggAGGCCGCu -3' miRNA: 3'- gcgCGACAG-------CUGUUCCGggUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 3508 | 0.66 | 0.590896 |
Target: 5'- gCGCGCUGaagCGAUgcGGCUC--GCCGUc -3' miRNA: 3'- -GCGCGACa--GCUGuuCCGGGucUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 43820 | 0.66 | 0.590896 |
Target: 5'- uCGCGg---CGACAcGGCCgCGGGCCGg -3' miRNA: 3'- -GCGCgacaGCUGUuCCGG-GUCUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 47338 | 0.66 | 0.590896 |
Target: 5'- gGCGCUcgaGACGcAGcGCCagaaAGGCCGCa -3' miRNA: 3'- gCGCGAcagCUGU-UC-CGGg---UCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 60578 | 0.66 | 0.60147 |
Target: 5'- cCGCGCggccCGGCGucucGCCCuGAUCGCg -3' miRNA: 3'- -GCGCGaca-GCUGUuc--CGGGuCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 45146 | 0.66 | 0.60147 |
Target: 5'- aCGUGCg--CGACAAGGCgCucgcGCUGCg -3' miRNA: 3'- -GCGCGacaGCUGUUCCGgGuc--UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 56975 | 0.66 | 0.60147 |
Target: 5'- gGCGUgGUCGGCAAGaccGCCUAcGACaagCGCg -3' miRNA: 3'- gCGCGaCAGCUGUUC---CGGGU-CUG---GCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 48614 | 0.66 | 0.612068 |
Target: 5'- uCGCaGC--UCGACGAGgaggaGCCCGG-CCGCu -3' miRNA: 3'- -GCG-CGacAGCUGUUC-----CGGGUCuGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 33439 | 0.66 | 0.612068 |
Target: 5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3' miRNA: 3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 50402 | 0.66 | 0.612068 |
Target: 5'- cCGCGCgg-CGAUcAGcGCCgCGGAgCGCg -3' miRNA: 3'- -GCGCGacaGCUGuUC-CGG-GUCUgGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 13000 | 0.66 | 0.612068 |
Target: 5'- cCGCGCagguUGUCGugucCAgcAGGCCgGGGCUGa -3' miRNA: 3'- -GCGCG----ACAGCu---GU--UCCGGgUCUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 61075 | 0.66 | 0.622683 |
Target: 5'- -aCGCcGUCGACgAAGGCgCAGcCCGa -3' miRNA: 3'- gcGCGaCAGCUG-UUCCGgGUCuGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 53357 | 0.66 | 0.622683 |
Target: 5'- cCGCGCgaaccUGaUCGGCGccaugcgccuGCCgCAGACCGCg -3' miRNA: 3'- -GCGCG-----AC-AGCUGUuc--------CGG-GUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 52542 | 0.66 | 0.622683 |
Target: 5'- uCGCGCUGgcgcaggCGAuggaaacgauCGAGGCCCuGucaGCCGa -3' miRNA: 3'- -GCGCGACa------GCU----------GUUCCGGGuC---UGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 53032 | 0.66 | 0.622683 |
Target: 5'- -uUGCcGcCGGCGAaGCCCAGGCgGCg -3' miRNA: 3'- gcGCGaCaGCUGUUcCGGGUCUGgCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 42968 | 0.66 | 0.622683 |
Target: 5'- aCGCGCaa-CGACu-GGCugaaaaccgcgCCGGGCCGCu -3' miRNA: 3'- -GCGCGacaGCUGuuCCG-----------GGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 6820 | 0.66 | 0.622683 |
Target: 5'- gCGCGCgagaUGuUCGACAagcacGGGCCCGGcAUCa- -3' miRNA: 3'- -GCGCG----AC-AGCUGU-----UCCGGGUC-UGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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