miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 49838 0.66 0.580354
Target:  5'- aGCGCg--CGAau-GGCCCGGuGCCGg -3'
miRNA:   3'- gCGCGacaGCUguuCCGGGUC-UGGCg -5'
24027 5' -58.4 NC_005262.1 + 43714 0.66 0.580354
Target:  5'- aCGCGCUcacCGACAagaAGGUCgAaACCGCg -3'
miRNA:   3'- -GCGCGAca-GCUGU---UCCGGgUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 36295 0.66 0.579302
Target:  5'- aCGCGaacaccucgGUCGACuucggugGGGGgCCGGugCGCu -3'
miRNA:   3'- -GCGCga-------CAGCUG-------UUCCgGGUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 35168 0.66 0.569852
Target:  5'- gCGaCGCUGgCGGCAaugAGGUCaC-GACCGCc -3'
miRNA:   3'- -GC-GCGACaGCUGU---UCCGG-GuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58595 0.66 0.569852
Target:  5'- aGgGCgGUCGACu-GGUUCAGguucGCCGCu -3'
miRNA:   3'- gCgCGaCAGCUGuuCCGGGUC----UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54196 0.66 0.569852
Target:  5'- gGCGCcGUCGACGucgAGGCgCAG-CaGCg -3'
miRNA:   3'- gCGCGaCAGCUGU---UCCGgGUCuGgCG- -5'
24027 5' -58.4 NC_005262.1 + 49761 0.66 0.569852
Target:  5'- gGCGCccgCGccCGAGGCUCcGGCCGCu -3'
miRNA:   3'- gCGCGacaGCu-GUUCCGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 45104 0.66 0.569852
Target:  5'- cCGCGCUcaacUCGGCGGGuGCCgCGaacACCGCg -3'
miRNA:   3'- -GCGCGAc---AGCUGUUC-CGG-GUc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58699 0.67 0.559398
Target:  5'- gCGCaacaaGCUGgCGGCAugcccgAGGCgCuGACCGCg -3'
miRNA:   3'- -GCG-----CGACaGCUGU------UCCGgGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 6466 0.67 0.559398
Target:  5'- aGaCGCcgGcaUCGACGcGGGCCCAGAaguUCGCa -3'
miRNA:   3'- gC-GCGa-C--AGCUGU-UCCGGGUCU---GGCG- -5'
24027 5' -58.4 NC_005262.1 + 1040 0.67 0.559398
Target:  5'- gGCGU--UCGACAAuaggcgcgaucGGCCCGGAgCCGa -3'
miRNA:   3'- gCGCGacAGCUGUU-----------CCGGGUCU-GGCg -5'
24027 5' -58.4 NC_005262.1 + 24873 0.67 0.559398
Target:  5'- uCGCGaUGUCGAagugcucGCCCGGcucGCCGCg -3'
miRNA:   3'- -GCGCgACAGCUguuc---CGGGUC---UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 20304 0.67 0.553151
Target:  5'- gGCGCUGcgauugaggcggcuuUgGACGAGGCaCCGGucuCCGa -3'
miRNA:   3'- gCGCGAC---------------AgCUGUUCCG-GGUCu--GGCg -5'
24027 5' -58.4 NC_005262.1 + 17191 0.67 0.548998
Target:  5'- cCGCGCgGUgGACcuccucgcGGCCC--GCCGCg -3'
miRNA:   3'- -GCGCGaCAgCUGuu------CCGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 34651 0.67 0.548998
Target:  5'- gGCGUcGcUCGACu-GGCUCGacGACCGCu -3'
miRNA:   3'- gCGCGaC-AGCUGuuCCGGGU--CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 27649 0.67 0.545889
Target:  5'- uCGCGCUGcgCGGCGuccucgccgGGGCUgagcucgcccucguCGGugCGCg -3'
miRNA:   3'- -GCGCGACa-GCUGU---------UCCGG--------------GUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 24470 0.67 0.542787
Target:  5'- uGCGCgccgccgguuuggcGUCGACAGGGUugcagguaUCAGGCgCGCc -3'
miRNA:   3'- gCGCGa-------------CAGCUGUUCCG--------GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 46522 0.67 0.538658
Target:  5'- gGCGCgggCGGCGcggcGGGCCCcugcGGACCuuGCg -3'
miRNA:   3'- gCGCGacaGCUGU----UCCGGG----UCUGG--CG- -5'
24027 5' -58.4 NC_005262.1 + 27532 0.67 0.537628
Target:  5'- cCGCGCgcacCGACGAGGgcgagcucagcCCCGGcgaggacGCCGCg -3'
miRNA:   3'- -GCGCGaca-GCUGUUCC-----------GGGUC-------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 29463 0.67 0.535569
Target:  5'- gGCGCagGUCGcCGAGGCgaaggcgaagcacaUCAG-CCGCa -3'
miRNA:   3'- gCGCGa-CAGCuGUUCCG--------------GGUCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.