miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 34288 0.67 0.532487
Target:  5'- gCGCGCUGUCGaaggacagcgaguucGCGAacGGCaCGGucGCCGCc -3'
miRNA:   3'- -GCGCGACAGC---------------UGUU--CCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 40355 0.67 0.527364
Target:  5'- gCGCGCUgaugucgaucGUCGGCGAcgucgacGGCCUgucuGCCGCg -3'
miRNA:   3'- -GCGCGA----------CAGCUGUU-------CCGGGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 622 0.67 0.518188
Target:  5'- aGCGgUGcUCGGCuuGGCUCAG-CUGCu -3'
miRNA:   3'- gCGCgAC-AGCUGuuCCGGGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49235 0.67 0.518188
Target:  5'- gCGCGCaGUCcgcgcGCGAGGUCCGcGACCa- -3'
miRNA:   3'- -GCGCGaCAGc----UGUUCCGGGU-CUGGcg -5'
24027 5' -58.4 NC_005262.1 + 14312 0.67 0.518188
Target:  5'- uCGUGCgugGUCGACAucgcGCCCGccgucaguGCCGCg -3'
miRNA:   3'- -GCGCGa--CAGCUGUuc--CGGGUc-------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 30733 0.67 0.508069
Target:  5'- cCGCGUUGUcCGACGcGGGCaCCuuGCCGa -3'
miRNA:   3'- -GCGCGACA-GCUGU-UCCG-GGucUGGCg -5'
24027 5' -58.4 NC_005262.1 + 12174 0.67 0.508069
Target:  5'- cCGCGCUGUcugcgCGGCAGGagcaaaucGCgCAGAUgGCg -3'
miRNA:   3'- -GCGCGACA-----GCUGUUC--------CGgGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 25411 0.67 0.508069
Target:  5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3'
miRNA:   3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 32314 0.68 0.498034
Target:  5'- aCGaCGUUGUUGAUcauGCCgAGGCCGCc -3'
miRNA:   3'- -GC-GCGACAGCUGuucCGGgUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 52321 0.68 0.498034
Target:  5'- aGCGCUc-CGgaACAAGGCgCCGGACgCGUa -3'
miRNA:   3'- gCGCGAcaGC--UGUUCCG-GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 54478 0.68 0.498034
Target:  5'- gGCGCUGcUCGcgguGCAgccgaagccgcuGGGCCC-GACCGa -3'
miRNA:   3'- gCGCGAC-AGC----UGU------------UCCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 24730 0.68 0.498034
Target:  5'- uCGCGCUGgcgcgcgcgaUCGGCGugcGGCCgaaguggauuCAGcACCGCg -3'
miRNA:   3'- -GCGCGAC----------AGCUGUu--CCGG----------GUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 12408 0.68 0.488089
Target:  5'- gCGCGCUG-CGGCAcGaGCCgCAuGCCGUc -3'
miRNA:   3'- -GCGCGACaGCUGUuC-CGG-GUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 40592 0.68 0.488089
Target:  5'- uCGCGCUGaCGGu--GGCgCAGauGCCGCa -3'
miRNA:   3'- -GCGCGACaGCUguuCCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54390 0.68 0.477259
Target:  5'- aCGCGUaccUGUCGggcaacgucgugcGCAagcucgcggAGGCgCAGGCCGCc -3'
miRNA:   3'- -GCGCG---ACAGC-------------UGU---------UCCGgGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 52727 0.68 0.475302
Target:  5'- cCGCGCUGcUGACGaaguucacgggcugGGGCgCCagcgAGAUCGCg -3'
miRNA:   3'- -GCGCGACaGCUGU--------------UCCG-GG----UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 28697 0.68 0.472375
Target:  5'- gGCGCgGUCGACGAuaucgacgaguuccGCCgCgAGGCCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUc-------------CGG-G-UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24613 0.68 0.458838
Target:  5'- uCGCGaagGUCGuCAAGGCUauuccgauCAGuCCGCa -3'
miRNA:   3'- -GCGCga-CAGCuGUUCCGG--------GUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54051 0.68 0.458838
Target:  5'- aGCGCacgGgCGACGAcGGCaCCGuGACCGUg -3'
miRNA:   3'- gCGCGa--CaGCUGUU-CCG-GGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 43664 0.69 0.43426
Target:  5'- uCGCGCUGaccUCGACcucccacgucugcgcGAGGaauCCGGACgGCa -3'
miRNA:   3'- -GCGCGAC---AGCUG---------------UUCCg--GGUCUGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.