miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 376 0.72 0.264381
Target:  5'- aCGC-CUGUCG-CAAGGagCCGGAgCCGCg -3'
miRNA:   3'- -GCGcGACAGCuGUUCCg-GGUCU-GGCG- -5'
24027 5' -58.4 NC_005262.1 + 622 0.67 0.518188
Target:  5'- aGCGgUGcUCGGCuuGGCUCAG-CUGCu -3'
miRNA:   3'- gCGCgAC-AGCUGuuCCGGGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 765 0.71 0.31328
Target:  5'- aCGCGCUcGUCGcCGAGGUUCGGGCgugGCu -3'
miRNA:   3'- -GCGCGA-CAGCuGUUCCGGGUCUGg--CG- -5'
24027 5' -58.4 NC_005262.1 + 1040 0.67 0.559398
Target:  5'- gGCGU--UCGACAAuaggcgcgaucGGCCCGGAgCCGa -3'
miRNA:   3'- gCGCGacAGCUGUU-----------CCGGGUCU-GGCg -5'
24027 5' -58.4 NC_005262.1 + 2032 0.7 0.35794
Target:  5'- uCGUGCUGcUCGACGGGGCgcguagcgagcaucCCAG-CCaGCg -3'
miRNA:   3'- -GCGCGAC-AGCUGUUCCG--------------GGUCuGG-CG- -5'
24027 5' -58.4 NC_005262.1 + 3342 0.72 0.277688
Target:  5'- uGuCGCUGaUGACGAGGCCgCGGcucgcuagauGCCGCa -3'
miRNA:   3'- gC-GCGACaGCUGUUCCGG-GUC----------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 3508 0.66 0.590896
Target:  5'- gCGCGCUGaagCGAUgcGGCUC--GCCGUc -3'
miRNA:   3'- -GCGCGACa--GCUGuuCCGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 5050 0.72 0.264381
Target:  5'- gGCGcCUGaUCGGCGggcAGGCCCGcGGCgGCg -3'
miRNA:   3'- gCGC-GAC-AGCUGU---UCCGGGU-CUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 6466 0.67 0.559398
Target:  5'- aGaCGCcgGcaUCGACGcGGGCCCAGAaguUCGCa -3'
miRNA:   3'- gC-GCGa-C--AGCUGU-UCCGGGUCU---GGCG- -5'
24027 5' -58.4 NC_005262.1 + 6820 0.66 0.622683
Target:  5'- gCGCGCgagaUGuUCGACAagcacGGGCCCGGcAUCa- -3'
miRNA:   3'- -GCGCG----AC-AGCUGU-----UCCGGGUC-UGGcg -5'
24027 5' -58.4 NC_005262.1 + 10970 0.74 0.221859
Target:  5'- uCGCGCUGUCGGCGc-GCCgGGAaCGCc -3'
miRNA:   3'- -GCGCGACAGCUGUucCGGgUCUgGCG- -5'
24027 5' -58.4 NC_005262.1 + 11024 0.69 0.421347
Target:  5'- gGCgGCUGUCGcGCAAGaCCgcgcgcagcaaCAGGCCGCa -3'
miRNA:   3'- gCG-CGACAGC-UGUUCcGG-----------GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 11246 0.71 0.328455
Target:  5'- gGCGUUGUCG-CAGGGCCgCccgugcGACCGg -3'
miRNA:   3'- gCGCGACAGCuGUUCCGG-Gu-----CUGGCg -5'
24027 5' -58.4 NC_005262.1 + 12174 0.67 0.508069
Target:  5'- cCGCGCUGUcugcgCGGCAGGagcaaaucGCgCAGAUgGCg -3'
miRNA:   3'- -GCGCGACA-----GCUGUUC--------CGgGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 12347 0.72 0.298642
Target:  5'- cCGCGa--UCGACAGGuGCCCGaccaucgacgcGACCGCa -3'
miRNA:   3'- -GCGCgacAGCUGUUC-CGGGU-----------CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 12408 0.68 0.488089
Target:  5'- gCGCGCUG-CGGCAcGaGCCgCAuGCCGUc -3'
miRNA:   3'- -GCGCGACaGCUGUuC-CGG-GUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 13000 0.66 0.612068
Target:  5'- cCGCGCagguUGUCGugucCAgcAGGCCgGGGCUGa -3'
miRNA:   3'- -GCGCG----ACAGCu---GU--UCCGGgUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 14312 0.67 0.518188
Target:  5'- uCGUGCgugGUCGACAucgcGCCCGccgucaguGCCGCg -3'
miRNA:   3'- -GCGCGa--CAGCUGUuc--CGGGUc-------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 14551 0.7 0.352222
Target:  5'- uGCGCUGgaUCGGCAGGcGUCUc-GCCGCg -3'
miRNA:   3'- gCGCGAC--AGCUGUUC-CGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 17084 0.73 0.251596
Target:  5'- gCGCGCccGUCGACGcGGC--GGGCCGCg -3'
miRNA:   3'- -GCGCGa-CAGCUGUuCCGggUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.