miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 17146 0.74 0.210827
Target:  5'- gCGCGCgucgcaaUCGAgAAGGCCggcaAGGCCGCg -3'
miRNA:   3'- -GCGCGac-----AGCUgUUCCGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 17191 0.67 0.548998
Target:  5'- cCGCGCgGUgGACcuccucgcGGCCC--GCCGCg -3'
miRNA:   3'- -GCGCGaCAgCUGuu------CCGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 20304 0.67 0.553151
Target:  5'- gGCGCUGcgauugaggcggcuuUgGACGAGGCaCCGGucuCCGa -3'
miRNA:   3'- gCGCGAC---------------AgCUGUUCCG-GGUCu--GGCg -5'
24027 5' -58.4 NC_005262.1 + 22215 0.71 0.3208
Target:  5'- uCGCGC--UCGACAA-GCUCAcGGCCGCg -3'
miRNA:   3'- -GCGCGacAGCUGUUcCGGGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24470 0.67 0.542787
Target:  5'- uGCGCgccgccgguuuggcGUCGACAGGGUugcagguaUCAGGCgCGCc -3'
miRNA:   3'- gCGCGa-------------CAGCUGUUCCG--------GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 24613 0.68 0.458838
Target:  5'- uCGCGaagGUCGuCAAGGCUauuccgauCAGuCCGCa -3'
miRNA:   3'- -GCGCga-CAGCuGUUCCGG--------GUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24730 0.68 0.498034
Target:  5'- uCGCGCUGgcgcgcgcgaUCGGCGugcGGCCgaaguggauuCAGcACCGCg -3'
miRNA:   3'- -GCGCGAC----------AGCUGUu--CCGG----------GUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24873 0.67 0.559398
Target:  5'- uCGCGaUGUCGAagugcucGCCCGGcucGCCGCg -3'
miRNA:   3'- -GCGCgACAGCUguuc---CGGGUC---UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24927 0.7 0.385763
Target:  5'- gGCGCagggUGaUCGGCAcGGCgCCGG-CCGCg -3'
miRNA:   3'- gCGCG----AC-AGCUGUuCCG-GGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 25411 0.67 0.508069
Target:  5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3'
miRNA:   3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 27532 0.67 0.537628
Target:  5'- cCGCGCgcacCGACGAGGgcgagcucagcCCCGGcgaggacGCCGCg -3'
miRNA:   3'- -GCGCGaca-GCUGUUCC-----------GGGUC-------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 27649 0.67 0.545889
Target:  5'- uCGCGCUGcgCGGCGuccucgccgGGGCUgagcucgcccucguCGGugCGCg -3'
miRNA:   3'- -GCGCGACa-GCUGU---------UCCGG--------------GUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 28697 0.68 0.472375
Target:  5'- gGCGCgGUCGACGAuaucgacgaguuccGCCgCgAGGCCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUc-------------CGG-G-UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 29463 0.67 0.535569
Target:  5'- gGCGCagGUCGcCGAGGCgaaggcgaagcacaUCAG-CCGCa -3'
miRNA:   3'- gCGCGa-CAGCuGUUCCG--------------GGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 30297 1.12 0.0004
Target:  5'- gCGCGCUGUCGACAAGGCCCAGACCGCg -3'
miRNA:   3'- -GCGCGACAGCUGUUCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 30733 0.67 0.508069
Target:  5'- cCGCGUUGUcCGACGcGGGCaCCuuGCCGa -3'
miRNA:   3'- -GCGCGACA-GCUGU-UCCG-GGucUGGCg -5'
24027 5' -58.4 NC_005262.1 + 32314 0.68 0.498034
Target:  5'- aCGaCGUUGUUGAUcauGCCgAGGCCGCc -3'
miRNA:   3'- -GC-GCGACAGCUGuucCGGgUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 32384 0.72 0.264381
Target:  5'- aCGCGCUGccUCGACGuucGcGCCCGcGCCGUa -3'
miRNA:   3'- -GCGCGAC--AGCUGUu--C-CGGGUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 33439 0.66 0.612068
Target:  5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3'
miRNA:   3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 33680 0.71 0.328455
Target:  5'- cCGCGUacacgGccaaauUCGGCAAGGUCCcGGCCGCc -3'
miRNA:   3'- -GCGCGa----C------AGCUGUUCCGGGuCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.