miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 34288 0.67 0.532487
Target:  5'- gCGCGCUGUCGaaggacagcgaguucGCGAacGGCaCGGucGCCGCc -3'
miRNA:   3'- -GCGCGACAGC---------------UGUU--CCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 34651 0.67 0.548998
Target:  5'- gGCGUcGcUCGACu-GGCUCGacGACCGCu -3'
miRNA:   3'- gCGCGaC-AGCUGuuCCGGGU--CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 35168 0.66 0.569852
Target:  5'- gCGaCGCUGgCGGCAaugAGGUCaC-GACCGCc -3'
miRNA:   3'- -GC-GCGACaGCUGU---UCCGG-GuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 36295 0.66 0.579302
Target:  5'- aCGCGaacaccucgGUCGACuucggugGGGGgCCGGugCGCu -3'
miRNA:   3'- -GCGCga-------CAGCUG-------UUCCgGGUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 38546 0.66 0.580354
Target:  5'- uCGCGgUGacgaUCGGCAccGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgAC----AGCUGUucCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 40355 0.67 0.527364
Target:  5'- gCGCGCUgaugucgaucGUCGGCGAcgucgacGGCCUgucuGCCGCg -3'
miRNA:   3'- -GCGCGA----------CAGCUGUU-------CCGGGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 40592 0.68 0.488089
Target:  5'- uCGCGCUGaCGGu--GGCgCAGauGCCGCa -3'
miRNA:   3'- -GCGCGACaGCUguuCCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 41651 0.8 0.078118
Target:  5'- aCGUGUUGUgGGCGuGGCCCGGAUCGUa -3'
miRNA:   3'- -GCGCGACAgCUGUuCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 42267 0.71 0.340981
Target:  5'- gCGCGCcGUCgcccaucacguacaGACGaucggccgcgaccGGGCCCGGcGCCGCg -3'
miRNA:   3'- -GCGCGaCAG--------------CUGU-------------UCCGGGUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 42376 0.66 0.580354
Target:  5'- aCGCGCgagaacacGUCGcCGGuGCCCGuGCCGCu -3'
miRNA:   3'- -GCGCGa-------CAGCuGUUcCGGGUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 42968 0.66 0.622683
Target:  5'- aCGCGCaa-CGACu-GGCugaaaaccgcgCCGGGCCGCu -3'
miRNA:   3'- -GCGCGacaGCUGuuCCG-----------GGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 43664 0.69 0.43426
Target:  5'- uCGCGCUGaccUCGACcucccacgucugcgcGAGGaauCCGGACgGCa -3'
miRNA:   3'- -GCGCGAC---AGCUG---------------UUCCg--GGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 43714 0.66 0.580354
Target:  5'- aCGCGCUcacCGACAagaAGGUCgAaACCGCg -3'
miRNA:   3'- -GCGCGAca-GCUGU---UCCGGgUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 43820 0.66 0.590896
Target:  5'- uCGCGg---CGACAcGGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgacaGCUGUuCCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 43917 0.71 0.31328
Target:  5'- cCGCGCg--CGGCc-GGCCCGcGGCCGUg -3'
miRNA:   3'- -GCGCGacaGCUGuuCCGGGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 44433 0.78 0.121122
Target:  5'- aGCGC-GUCGACGuucuuugcGGGCaCCAGACCGg -3'
miRNA:   3'- gCGCGaCAGCUGU--------UCCG-GGUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 44599 0.7 0.36041
Target:  5'- aGCGCgg-CGAuCAGgcuGGCCCAGAUgGCg -3'
miRNA:   3'- gCGCGacaGCU-GUU---CCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 45104 0.66 0.569852
Target:  5'- cCGCGCUcaacUCGGCGGGuGCCgCGaacACCGCg -3'
miRNA:   3'- -GCGCGAc---AGCUGUUC-CGG-GUc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 45146 0.66 0.60147
Target:  5'- aCGUGCg--CGACAAGGCgCucgcGCUGCg -3'
miRNA:   3'- -GCGCGacaGCUGUUCCGgGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 46401 0.7 0.394472
Target:  5'- gCGCGCcucGUCgGGCuGGGCCCgcaAGGuCCGCa -3'
miRNA:   3'- -GCGCGa--CAG-CUGuUCCGGG---UCU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.