miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 53427 0.73 0.251596
Target:  5'- uCGCGCgGUCGGCGAGGUagcGGCgCGCg -3'
miRNA:   3'- -GCGCGaCAGCUGUUCCGgguCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 53715 0.7 0.377182
Target:  5'- cCGCGUccaUGUCGACGcccGGCUCGggaacGACCGUg -3'
miRNA:   3'- -GCGCG---ACAGCUGUu--CCGGGU-----CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54051 0.68 0.458838
Target:  5'- aGCGCacgGgCGACGAcGGCaCCGuGACCGUg -3'
miRNA:   3'- gCGCGa--CaGCUGUU-CCG-GGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54196 0.66 0.569852
Target:  5'- gGCGCcGUCGACGucgAGGCgCAG-CaGCg -3'
miRNA:   3'- gCGCGaCAGCUGU---UCCGgGUCuGgCG- -5'
24027 5' -58.4 NC_005262.1 + 54390 0.68 0.477259
Target:  5'- aCGCGUaccUGUCGggcaacgucgugcGCAagcucgcggAGGCgCAGGCCGCc -3'
miRNA:   3'- -GCGCG---ACAGC-------------UGU---------UCCGgGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54478 0.68 0.498034
Target:  5'- gGCGCUGcUCGcgguGCAgccgaagccgcuGGGCCC-GACCGa -3'
miRNA:   3'- gCGCGAC-AGC----UGU------------UCCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 54590 0.71 0.343368
Target:  5'- cCGUGaUGUCGGucGGGCCCAGcggcuucggcugcACCGCg -3'
miRNA:   3'- -GCGCgACAGCUguUCCGGGUC-------------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 56975 0.66 0.60147
Target:  5'- gGCGUgGUCGGCAAGaccGCCUAcGACaagCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUC---CGGGU-CUG---GCG- -5'
24027 5' -58.4 NC_005262.1 + 57683 0.69 0.402417
Target:  5'- uCGCGCgccgGgcgCGGCAAGGUgCuuucgguAGGCCGCc -3'
miRNA:   3'- -GCGCGa---Ca--GCUGUUCCGgG-------UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 57796 0.66 0.586675
Target:  5'- gCGCGC-GUCGugGcGGCCUAccgaaagcaccuuGCCGCg -3'
miRNA:   3'- -GCGCGaCAGCugUuCCGGGUc------------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58595 0.66 0.569852
Target:  5'- aGgGCgGUCGACu-GGUUCAGguucGCCGCu -3'
miRNA:   3'- gCgCGaCAGCUGuuCCGGGUC----UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58699 0.67 0.559398
Target:  5'- gCGCaacaaGCUGgCGGCAugcccgAGGCgCuGACCGCg -3'
miRNA:   3'- -GCG-----CGACaGCUGU------UCCGgGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58900 0.69 0.430547
Target:  5'- cCGCGCUGcgCGAuCAGgccggcGGCCC-GACCGa -3'
miRNA:   3'- -GCGCGACa-GCU-GUU------CCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 59225 0.73 0.251596
Target:  5'- gCGCGCgg-CGACGcGGCCCGG-CCGg -3'
miRNA:   3'- -GCGCGacaGCUGUuCCGGGUCuGGCg -5'
24027 5' -58.4 NC_005262.1 + 59653 0.71 0.305894
Target:  5'- uCGCGCUGgucgcCGACAA--CCCGGAUCGUg -3'
miRNA:   3'- -GCGCGACa----GCUGUUccGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 60477 0.72 0.264381
Target:  5'- uGaCGCUGcgCGAuCAGGGCgagacgCCGGGCCGCg -3'
miRNA:   3'- gC-GCGACa-GCU-GUUCCG------GGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 60578 0.66 0.60147
Target:  5'- cCGCGCggccCGGCGucucGCCCuGAUCGCg -3'
miRNA:   3'- -GCGCGaca-GCUGUuc--CGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 61075 0.66 0.622683
Target:  5'- -aCGCcGUCGACgAAGGCgCAGcCCGa -3'
miRNA:   3'- gcGCGaCAGCUG-UUCCGgGUCuGGCg -5'
24027 5' -58.4 NC_005262.1 + 61360 0.77 0.138572
Target:  5'- cCGCGCcgaucgagucUGUC-ACGAacuGGCCCAGGCCGCc -3'
miRNA:   3'- -GCGCG----------ACAGcUGUU---CCGGGUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.