miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 53032 0.66 0.622683
Target:  5'- -uUGCcGcCGGCGAaGCCCAGGCgGCg -3'
miRNA:   3'- gcGCGaCaGCUGUUcCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 52727 0.68 0.475302
Target:  5'- cCGCGCUGcUGACGaaguucacgggcugGGGCgCCagcgAGAUCGCg -3'
miRNA:   3'- -GCGCGACaGCUGU--------------UCCG-GG----UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 52542 0.66 0.622683
Target:  5'- uCGCGCUGgcgcaggCGAuggaaacgauCGAGGCCCuGucaGCCGa -3'
miRNA:   3'- -GCGCGACa------GCU----------GUUCCGGGuC---UGGCg -5'
24027 5' -58.4 NC_005262.1 + 52321 0.68 0.498034
Target:  5'- aGCGCUc-CGgaACAAGGCgCCGGACgCGUa -3'
miRNA:   3'- gCGCGAcaGC--UGUUCCG-GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 51932 0.66 0.58984
Target:  5'- --aGCUGUUcacgacgGACAAGGUggAGGCCGCu -3'
miRNA:   3'- gcgCGACAG-------CUGUUCCGggUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 51369 0.72 0.270969
Target:  5'- cCGCGCcGUCcGCGAcgccGGCCaAGGCCGCg -3'
miRNA:   3'- -GCGCGaCAGcUGUU----CCGGgUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 51126 0.76 0.158302
Target:  5'- aCGCGCcgGUCGACAAGGCgCucgacGCCGUg -3'
miRNA:   3'- -GCGCGa-CAGCUGUUCCGgGuc---UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 50668 0.73 0.239324
Target:  5'- cCGgGUUGagCGGCAgcGGGCUCGGGCUGCg -3'
miRNA:   3'- -GCgCGACa-GCUGU--UCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 50402 0.66 0.612068
Target:  5'- cCGCGCgg-CGAUcAGcGCCgCGGAgCGCg -3'
miRNA:   3'- -GCGCGacaGCUGuUC-CGG-GUCUgGCG- -5'
24027 5' -58.4 NC_005262.1 + 49931 0.7 0.394472
Target:  5'- cCGC-CUGaCGACc-GGCCCGGAUgGCg -3'
miRNA:   3'- -GCGcGACaGCUGuuCCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 49838 0.66 0.580354
Target:  5'- aGCGCg--CGAau-GGCCCGGuGCCGg -3'
miRNA:   3'- gCGCGacaGCUguuCCGGGUC-UGGCg -5'
24027 5' -58.4 NC_005262.1 + 49761 0.66 0.569852
Target:  5'- gGCGCccgCGccCGAGGCUCcGGCCGCu -3'
miRNA:   3'- gCGCGacaGCu-GUUCCGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49618 0.7 0.352222
Target:  5'- gCGCGCUcugCGGCAgcuccucgagcAGGCCCucggcGAUCGCg -3'
miRNA:   3'- -GCGCGAca-GCUGU-----------UCCGGGu----CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49235 0.67 0.518188
Target:  5'- gCGCGCaGUCcgcgcGCGAGGUCCGcGACCa- -3'
miRNA:   3'- -GCGCGaCAGc----UGUUCCGGGU-CUGGcg -5'
24027 5' -58.4 NC_005262.1 + 49140 0.72 0.264381
Target:  5'- gGCGaagGUCGGCAcgguGGGCgugCAGGCCGCa -3'
miRNA:   3'- gCGCga-CAGCUGU----UCCGg--GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 48614 0.66 0.612068
Target:  5'- uCGCaGC--UCGACGAGgaggaGCCCGG-CCGCu -3'
miRNA:   3'- -GCG-CGacAGCUGUUC-----CGGGUCuGGCG- -5'
24027 5' -58.4 NC_005262.1 + 47338 0.66 0.590896
Target:  5'- gGCGCUcgaGACGcAGcGCCagaaAGGCCGCa -3'
miRNA:   3'- gCGCGAcagCUGU-UC-CGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 46914 0.72 0.291524
Target:  5'- gCGCGCUuuucUCGGCGAGcGCgCGGGCCuGCa -3'
miRNA:   3'- -GCGCGAc---AGCUGUUC-CGgGUCUGG-CG- -5'
24027 5' -58.4 NC_005262.1 + 46522 0.67 0.538658
Target:  5'- gGCGCgggCGGCGcggcGGGCCCcugcGGACCuuGCg -3'
miRNA:   3'- gCGCGacaGCUGU----UCCGGG----UCUGG--CG- -5'
24027 5' -58.4 NC_005262.1 + 46401 0.7 0.394472
Target:  5'- gCGCGCcucGUCgGGCuGGGCCCgcaAGGuCCGCa -3'
miRNA:   3'- -GCGCGa--CAG-CUGuUCCGGG---UCU-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.