Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 5' | -58.4 | NC_005262.1 | + | 33439 | 0.66 | 0.612068 |
Target: 5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3' miRNA: 3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 32384 | 0.72 | 0.264381 |
Target: 5'- aCGCGCUGccUCGACGuucGcGCCCGcGCCGUa -3' miRNA: 3'- -GCGCGAC--AGCUGUu--C-CGGGUcUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 32314 | 0.68 | 0.498034 |
Target: 5'- aCGaCGUUGUUGAUcauGCCgAGGCCGCc -3' miRNA: 3'- -GC-GCGACAGCUGuucCGGgUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 30733 | 0.67 | 0.508069 |
Target: 5'- cCGCGUUGUcCGACGcGGGCaCCuuGCCGa -3' miRNA: 3'- -GCGCGACA-GCUGU-UCCG-GGucUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 30297 | 1.12 | 0.0004 |
Target: 5'- gCGCGCUGUCGACAAGGCCCAGACCGCg -3' miRNA: 3'- -GCGCGACAGCUGUUCCGGGUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 29463 | 0.67 | 0.535569 |
Target: 5'- gGCGCagGUCGcCGAGGCgaaggcgaagcacaUCAG-CCGCa -3' miRNA: 3'- gCGCGa-CAGCuGUUCCG--------------GGUCuGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 28697 | 0.68 | 0.472375 |
Target: 5'- gGCGCgGUCGACGAuaucgacgaguuccGCCgCgAGGCCGCg -3' miRNA: 3'- gCGCGaCAGCUGUUc-------------CGG-G-UCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 27649 | 0.67 | 0.545889 |
Target: 5'- uCGCGCUGcgCGGCGuccucgccgGGGCUgagcucgcccucguCGGugCGCg -3' miRNA: 3'- -GCGCGACa-GCUGU---------UCCGG--------------GUCugGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 27532 | 0.67 | 0.537628 |
Target: 5'- cCGCGCgcacCGACGAGGgcgagcucagcCCCGGcgaggacGCCGCg -3' miRNA: 3'- -GCGCGaca-GCUGUUCC-----------GGGUC-------UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 25411 | 0.67 | 0.508069 |
Target: 5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3' miRNA: 3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24927 | 0.7 | 0.385763 |
Target: 5'- gGCGCagggUGaUCGGCAcGGCgCCGG-CCGCg -3' miRNA: 3'- gCGCG----AC-AGCUGUuCCG-GGUCuGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24873 | 0.67 | 0.559398 |
Target: 5'- uCGCGaUGUCGAagugcucGCCCGGcucGCCGCg -3' miRNA: 3'- -GCGCgACAGCUguuc---CGGGUC---UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24730 | 0.68 | 0.498034 |
Target: 5'- uCGCGCUGgcgcgcgcgaUCGGCGugcGGCCgaaguggauuCAGcACCGCg -3' miRNA: 3'- -GCGCGAC----------AGCUGUu--CCGG----------GUC-UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24613 | 0.68 | 0.458838 |
Target: 5'- uCGCGaagGUCGuCAAGGCUauuccgauCAGuCCGCa -3' miRNA: 3'- -GCGCga-CAGCuGUUCCGG--------GUCuGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24470 | 0.67 | 0.542787 |
Target: 5'- uGCGCgccgccgguuuggcGUCGACAGGGUugcagguaUCAGGCgCGCc -3' miRNA: 3'- gCGCGa-------------CAGCUGUUCCG--------GGUCUG-GCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 22215 | 0.71 | 0.3208 |
Target: 5'- uCGCGC--UCGACAA-GCUCAcGGCCGCg -3' miRNA: 3'- -GCGCGacAGCUGUUcCGGGU-CUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 20304 | 0.67 | 0.553151 |
Target: 5'- gGCGCUGcgauugaggcggcuuUgGACGAGGCaCCGGucuCCGa -3' miRNA: 3'- gCGCGAC---------------AgCUGUUCCG-GGUCu--GGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 17191 | 0.67 | 0.548998 |
Target: 5'- cCGCGCgGUgGACcuccucgcGGCCC--GCCGCg -3' miRNA: 3'- -GCGCGaCAgCUGuu------CCGGGucUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 17146 | 0.74 | 0.210827 |
Target: 5'- gCGCGCgucgcaaUCGAgAAGGCCggcaAGGCCGCg -3' miRNA: 3'- -GCGCGac-----AGCUgUUCCGGg---UCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 17084 | 0.73 | 0.251596 |
Target: 5'- gCGCGCccGUCGACGcGGC--GGGCCGCg -3' miRNA: 3'- -GCGCGa-CAGCUGUuCCGggUCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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