miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 10970 0.74 0.221859
Target:  5'- uCGCGCUGUCGGCGc-GCCgGGAaCGCc -3'
miRNA:   3'- -GCGCGACAGCUGUucCGGgUCUgGCG- -5'
24027 5' -58.4 NC_005262.1 + 17146 0.74 0.210827
Target:  5'- gCGCGCgucgcaaUCGAgAAGGCCggcaAGGCCGCg -3'
miRNA:   3'- -GCGCGac-----AGCUgUUCCGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 51126 0.76 0.158302
Target:  5'- aCGCGCcgGUCGACAAGGCgCucgacGCCGUg -3'
miRNA:   3'- -GCGCGa-CAGCUGUUCCGgGuc---UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 30297 1.12 0.0004
Target:  5'- gCGCGCUGUCGACAAGGCCCAGACCGCg -3'
miRNA:   3'- -GCGCGACAGCUGUUCCGGGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 33680 0.71 0.328455
Target:  5'- cCGCGUacacgGccaaauUCGGCAAGGUCCcGGCCGCc -3'
miRNA:   3'- -GCGCGa----C------AGCUGUUCCGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 14551 0.7 0.352222
Target:  5'- uGCGCUGgaUCGGCAGGcGUCUc-GCCGCg -3'
miRNA:   3'- gCGCGAC--AGCUGUUC-CGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54478 0.68 0.498034
Target:  5'- gGCGCUGcUCGcgguGCAgccgaagccgcuGGGCCC-GACCGa -3'
miRNA:   3'- gCGCGAC-AGC----UGU------------UCCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 52321 0.68 0.498034
Target:  5'- aGCGCUc-CGgaACAAGGCgCCGGACgCGUa -3'
miRNA:   3'- gCGCGAcaGC--UGUUCCG-GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 40592 0.68 0.488089
Target:  5'- uCGCGCUGaCGGu--GGCgCAGauGCCGCa -3'
miRNA:   3'- -GCGCGACaGCUguuCCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54390 0.68 0.477259
Target:  5'- aCGCGUaccUGUCGggcaacgucgugcGCAagcucgcggAGGCgCAGGCCGCc -3'
miRNA:   3'- -GCGCG---ACAGC-------------UGU---------UCCGgGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 52727 0.68 0.475302
Target:  5'- cCGCGCUGcUGACGaaguucacgggcugGGGCgCCagcgAGAUCGCg -3'
miRNA:   3'- -GCGCGACaGCUGU--------------UCCG-GG----UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 28697 0.68 0.472375
Target:  5'- gGCGCgGUCGACGAuaucgacgaguuccGCCgCgAGGCCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUc-------------CGG-G-UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54051 0.68 0.458838
Target:  5'- aGCGCacgGgCGACGAcGGCaCCGuGACCGUg -3'
miRNA:   3'- gCGCGa--CaGCUGUU-CCG-GGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 58900 0.69 0.430547
Target:  5'- cCGCGCUGcgCGAuCAGgccggcGGCCC-GACCGa -3'
miRNA:   3'- -GCGCGACa-GCU-GUU------CCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 11024 0.69 0.421347
Target:  5'- gGCgGCUGUCGcGCAAGaCCgcgcgcagcaaCAGGCCGCa -3'
miRNA:   3'- gCG-CGACAGC-UGUUCcGG-----------GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 57683 0.69 0.402417
Target:  5'- uCGCGCgccgGgcgCGGCAAGGUgCuuucgguAGGCCGCc -3'
miRNA:   3'- -GCGCGa---Ca--GCUGUUCCGgG-------UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49931 0.7 0.394472
Target:  5'- cCGC-CUGaCGACc-GGCCCGGAUgGCg -3'
miRNA:   3'- -GCGcGACaGCUGuuCCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 46401 0.7 0.394472
Target:  5'- gCGCGCcucGUCgGGCuGGGCCCgcaAGGuCCGCa -3'
miRNA:   3'- -GCGCGa--CAG-CUGuUCCGGG---UCU-GGCG- -5'
24027 5' -58.4 NC_005262.1 + 2032 0.7 0.35794
Target:  5'- uCGUGCUGcUCGACGGGGCgcguagcgagcaucCCAG-CCaGCg -3'
miRNA:   3'- -GCGCGAC-AGCUGUUCCG--------------GGUCuGG-CG- -5'
24027 5' -58.4 NC_005262.1 + 41651 0.8 0.078118
Target:  5'- aCGUGUUGUgGGCGuGGCCCGGAUCGUa -3'
miRNA:   3'- -GCGCGACAgCUGUuCCGGGUCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.