Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24027 | 5' | -58.4 | NC_005262.1 | + | 54196 | 0.66 | 0.569852 |
Target: 5'- gGCGCcGUCGACGucgAGGCgCAG-CaGCg -3' miRNA: 3'- gCGCGaCAGCUGU---UCCGgGUCuGgCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 42376 | 0.66 | 0.580354 |
Target: 5'- aCGCGCgagaacacGUCGcCGGuGCCCGuGCCGCu -3' miRNA: 3'- -GCGCGa-------CAGCuGUUcCGGGUcUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 57796 | 0.66 | 0.586675 |
Target: 5'- gCGCGC-GUCGugGcGGCCUAccgaaagcaccuuGCCGCg -3' miRNA: 3'- -GCGCGaCAGCugUuCCGGGUc------------UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 3508 | 0.66 | 0.590896 |
Target: 5'- gCGCGCUGaagCGAUgcGGCUC--GCCGUc -3' miRNA: 3'- -GCGCGACa--GCUGuuCCGGGucUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 60578 | 0.66 | 0.60147 |
Target: 5'- cCGCGCggccCGGCGucucGCCCuGAUCGCg -3' miRNA: 3'- -GCGCGaca-GCUGUuc--CGGGuCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 33439 | 0.66 | 0.612068 |
Target: 5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3' miRNA: 3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 13000 | 0.66 | 0.612068 |
Target: 5'- cCGCGCagguUGUCGugucCAgcAGGCCgGGGCUGa -3' miRNA: 3'- -GCGCG----ACAGCu---GU--UCCGGgUCUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 53032 | 0.66 | 0.622683 |
Target: 5'- -uUGCcGcCGGCGAaGCCCAGGCgGCg -3' miRNA: 3'- gcGCGaCaGCUGUUcCGGGUCUGgCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 58595 | 0.66 | 0.569852 |
Target: 5'- aGgGCgGUCGACu-GGUUCAGguucGCCGCu -3' miRNA: 3'- gCgCGaCAGCUGuuCCGGGUC----UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24873 | 0.67 | 0.559398 |
Target: 5'- uCGCGaUGUCGAagugcucGCCCGGcucGCCGCg -3' miRNA: 3'- -GCGCgACAGCUguuc---CGGGUC---UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 32314 | 0.68 | 0.498034 |
Target: 5'- aCGaCGUUGUUGAUcauGCCgAGGCCGCc -3' miRNA: 3'- -GC-GCGACAGCUGuucCGGgUCUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 30733 | 0.67 | 0.508069 |
Target: 5'- cCGCGUUGUcCGACGcGGGCaCCuuGCCGa -3' miRNA: 3'- -GCGCGACA-GCUGU-UCCG-GGucUGGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 14312 | 0.67 | 0.518188 |
Target: 5'- uCGUGCgugGUCGACAucgcGCCCGccgucaguGCCGCg -3' miRNA: 3'- -GCGCGa--CAGCUGUuc--CGGGUc-------UGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 46522 | 0.67 | 0.538658 |
Target: 5'- gGCGCgggCGGCGcggcGGGCCCcugcGGACCuuGCg -3' miRNA: 3'- gCGCGacaGCUGU----UCCGGG----UCUGG--CG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 24470 | 0.67 | 0.542787 |
Target: 5'- uGCGCgccgccgguuuggcGUCGACAGGGUugcagguaUCAGGCgCGCc -3' miRNA: 3'- gCGCGa-------------CAGCUGUUCCG--------GGUCUG-GCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 27649 | 0.67 | 0.545889 |
Target: 5'- uCGCGCUGcgCGGCGuccucgccgGGGCUgagcucgcccucguCGGugCGCg -3' miRNA: 3'- -GCGCGACa-GCUGU---------UCCGG--------------GUCugGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 17191 | 0.67 | 0.548998 |
Target: 5'- cCGCGCgGUgGACcuccucgcGGCCC--GCCGCg -3' miRNA: 3'- -GCGCGaCAgCUGuu------CCGGGucUGGCG- -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 20304 | 0.67 | 0.553151 |
Target: 5'- gGCGCUGcgauugaggcggcuuUgGACGAGGCaCCGGucuCCGa -3' miRNA: 3'- gCGCGAC---------------AgCUGUUCCG-GGUCu--GGCg -5' |
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24027 | 5' | -58.4 | NC_005262.1 | + | 6820 | 0.66 | 0.622683 |
Target: 5'- gCGCGCgagaUGuUCGACAagcacGGGCCCGGcAUCa- -3' miRNA: 3'- -GCGCG----AC-AGCUGU-----UCCGGGUC-UGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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