miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 12408 0.68 0.488089
Target:  5'- gCGCGCUG-CGGCAcGaGCCgCAuGCCGUc -3'
miRNA:   3'- -GCGCGACaGCUGUuC-CGG-GUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 33439 0.66 0.612068
Target:  5'- gCGgGUUGUCGAuCGGcGGCaCGGuGCCGCg -3'
miRNA:   3'- -GCgCGACAGCU-GUU-CCGgGUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 376 0.72 0.264381
Target:  5'- aCGC-CUGUCG-CAAGGagCCGGAgCCGCg -3'
miRNA:   3'- -GCGcGACAGCuGUUCCg-GGUCU-GGCG- -5'
24027 5' -58.4 NC_005262.1 + 42267 0.71 0.340981
Target:  5'- gCGCGCcGUCgcccaucacguacaGACGaucggccgcgaccGGGCCCGGcGCCGCg -3'
miRNA:   3'- -GCGCGaCAG--------------CUGU-------------UCCGGGUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 30733 0.67 0.508069
Target:  5'- cCGCGUUGUcCGACGcGGGCaCCuuGCCGa -3'
miRNA:   3'- -GCGCGACA-GCUGU-UCCG-GGucUGGCg -5'
24027 5' -58.4 NC_005262.1 + 13000 0.66 0.612068
Target:  5'- cCGCGCagguUGUCGugucCAgcAGGCCgGGGCUGa -3'
miRNA:   3'- -GCGCG----ACAGCu---GU--UCCGGgUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 54590 0.71 0.343368
Target:  5'- cCGUGaUGUCGGucGGGCCCAGcggcuucggcugcACCGCg -3'
miRNA:   3'- -GCGCgACAGCUguUCCGGGUC-------------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 53032 0.66 0.622683
Target:  5'- -uUGCcGcCGGCGAaGCCCAGGCgGCg -3'
miRNA:   3'- gcGCGaCaGCUGUUcCGGGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 6820 0.66 0.622683
Target:  5'- gCGCGCgagaUGuUCGACAagcacGGGCCCGGcAUCa- -3'
miRNA:   3'- -GCGCG----AC-AGCUGU-----UCCGGGUC-UGGcg -5'
24027 5' -58.4 NC_005262.1 + 24873 0.67 0.559398
Target:  5'- uCGCGaUGUCGAagugcucGCCCGGcucGCCGCg -3'
miRNA:   3'- -GCGCgACAGCUguuc---CGGGUC---UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 32314 0.68 0.498034
Target:  5'- aCGaCGUUGUUGAUcauGCCgAGGCCGCc -3'
miRNA:   3'- -GC-GCGACAGCUGuucCGGgUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 53715 0.7 0.377182
Target:  5'- cCGCGUccaUGUCGACGcccGGCUCGggaacGACCGUg -3'
miRNA:   3'- -GCGCG---ACAGCUGUu--CCGGGU-----CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 24470 0.67 0.542787
Target:  5'- uGCGCgccgccgguuuggcGUCGACAGGGUugcagguaUCAGGCgCGCc -3'
miRNA:   3'- gCGCGa-------------CAGCUGUUCCG--------GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 20304 0.67 0.553151
Target:  5'- gGCGCUGcgauugaggcggcuuUgGACGAGGCaCCGGucuCCGa -3'
miRNA:   3'- gCGCGAC---------------AgCUGUUCCG-GGUCu--GGCg -5'
24027 5' -58.4 NC_005262.1 + 42376 0.66 0.580354
Target:  5'- aCGCGCgagaacacGUCGcCGGuGCCCGuGCCGCu -3'
miRNA:   3'- -GCGCGa-------CAGCuGUUcCGGGUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 60578 0.66 0.60147
Target:  5'- cCGCGCggccCGGCGucucGCCCuGAUCGCg -3'
miRNA:   3'- -GCGCGaca-GCUGUuc--CGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 44433 0.78 0.121122
Target:  5'- aGCGC-GUCGACGuucuuugcGGGCaCCAGACCGg -3'
miRNA:   3'- gCGCGaCAGCUGU--------UCCG-GGUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 59225 0.73 0.251596
Target:  5'- gCGCGCgg-CGACGcGGCCCGG-CCGg -3'
miRNA:   3'- -GCGCGacaGCUGUuCCGGGUCuGGCg -5'
24027 5' -58.4 NC_005262.1 + 46914 0.72 0.291524
Target:  5'- gCGCGCUuuucUCGGCGAGcGCgCGGGCCuGCa -3'
miRNA:   3'- -GCGCGAc---AGCUGUUC-CGgGUCUGG-CG- -5'
24027 5' -58.4 NC_005262.1 + 11246 0.71 0.328455
Target:  5'- gGCGUUGUCG-CAGGGCCgCccgugcGACCGg -3'
miRNA:   3'- gCGCGACAGCuGUUCCGG-Gu-----CUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.