miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 45146 0.66 0.60147
Target:  5'- aCGUGCg--CGACAAGGCgCucgcGCUGCg -3'
miRNA:   3'- -GCGCGacaGCUGUUCCGgGuc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 56975 0.66 0.60147
Target:  5'- gGCGUgGUCGGCAAGaccGCCUAcGACaagCGCg -3'
miRNA:   3'- gCGCGaCAGCUGUUC---CGGGU-CUG---GCG- -5'
24027 5' -58.4 NC_005262.1 + 54390 0.68 0.477259
Target:  5'- aCGCGUaccUGUCGggcaacgucgugcGCAagcucgcggAGGCgCAGGCCGCc -3'
miRNA:   3'- -GCGCG---ACAGC-------------UGU---------UCCGgGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 50402 0.66 0.612068
Target:  5'- cCGCGCgg-CGAUcAGcGCCgCGGAgCGCg -3'
miRNA:   3'- -GCGCGacaGCUGuUC-CGG-GUCUgGCG- -5'
24027 5' -58.4 NC_005262.1 + 42968 0.66 0.622683
Target:  5'- aCGCGCaa-CGACu-GGCugaaaaccgcgCCGGGCCGCu -3'
miRNA:   3'- -GCGCGacaGCUGuuCCG-----------GGUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 52542 0.66 0.622683
Target:  5'- uCGCGCUGgcgcaggCGAuggaaacgauCGAGGCCCuGucaGCCGa -3'
miRNA:   3'- -GCGCGACa------GCU----------GUUCCGGGuC---UGGCg -5'
24027 5' -58.4 NC_005262.1 + 14551 0.7 0.352222
Target:  5'- uGCGCUGgaUCGGCAGGcGUCUc-GCCGCg -3'
miRNA:   3'- gCGCGAC--AGCUGUUC-CGGGucUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 53357 0.66 0.622683
Target:  5'- cCGCGCgaaccUGaUCGGCGccaugcgccuGCCgCAGACCGCg -3'
miRNA:   3'- -GCGCG-----AC-AGCUGUuc--------CGG-GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 61075 0.66 0.622683
Target:  5'- -aCGCcGUCGACgAAGGCgCAGcCCGa -3'
miRNA:   3'- gcGCGaCAGCUG-UUCCGgGUCuGGCg -5'
24027 5' -58.4 NC_005262.1 + 43820 0.66 0.590896
Target:  5'- uCGCGg---CGACAcGGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgacaGCUGUuCCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 47338 0.66 0.590896
Target:  5'- gGCGCUcgaGACGcAGcGCCagaaAGGCCGCa -3'
miRNA:   3'- gCGCGAcagCUGU-UC-CGGg---UCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 33680 0.71 0.328455
Target:  5'- cCGCGUacacgGccaaauUCGGCAAGGUCCcGGCCGCc -3'
miRNA:   3'- -GCGCGa----C------AGCUGUUCCGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 12174 0.67 0.508069
Target:  5'- cCGCGCUGUcugcgCGGCAGGagcaaaucGCgCAGAUgGCg -3'
miRNA:   3'- -GCGCGACA-----GCUGUUC--------CGgGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 22215 0.71 0.3208
Target:  5'- uCGCGC--UCGACAA-GCUCAcGGCCGCg -3'
miRNA:   3'- -GCGCGacAGCUGUUcCGGGU-CUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 25411 0.67 0.508069
Target:  5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3'
miRNA:   3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 5050 0.72 0.264381
Target:  5'- gGCGcCUGaUCGGCGggcAGGCCCGcGGCgGCg -3'
miRNA:   3'- gCGC-GAC-AGCUGU---UCCGGGU-CUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 24730 0.68 0.498034
Target:  5'- uCGCGCUGgcgcgcgcgaUCGGCGugcGGCCgaaguggauuCAGcACCGCg -3'
miRNA:   3'- -GCGCGAC----------AGCUGUu--CCGG----------GUC-UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 54478 0.68 0.498034
Target:  5'- gGCGCUGcUCGcgguGCAgccgaagccgcuGGGCCC-GACCGa -3'
miRNA:   3'- gCGCGAC-AGC----UGU------------UCCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 52321 0.68 0.498034
Target:  5'- aGCGCUc-CGgaACAAGGCgCCGGACgCGUa -3'
miRNA:   3'- gCGCGAcaGC--UGUUCCG-GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 40592 0.68 0.488089
Target:  5'- uCGCGCUGaCGGu--GGCgCAGauGCCGCa -3'
miRNA:   3'- -GCGCGACaGCUguuCCGgGUC--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.